« Back to Oryza barthii search


Detailed information on CNT30574671


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6I544|GL52_ORYSJ, E-value = 3e-62

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672592Oryza barthiiSetaria viridis10.8834.6286.8799forward
CNT30339202Oryza barthiiEragrostis tef17.846.2982.1162forward
CNT30369486Oryza barthiiOryza glumipatula51.2152.6699.79466forward
CNT3099889Oryza barthiiOryza rufipogon73.6395.1797.76670forward

Expression of CNT30574671

Peptides detected in this lncRNA

>peptide 1 (63 aa)
MIVLIINKSSSFSPATYYKKLLYYYYILHVALTQISVIKMALYHRQVHIVNHQITDKSIQILR*

>peptide 2 (45 aa)
MDCVPGSWLLKAETTAAGLPPTSPWEMVRERSLLAVVTKPTSSSP*

>peptide 3 (36 aa)
MRARETPRVLSPGTFSTLAPVTTAPVVVSATQMSWR*

Sequence

>CNT30574671
ACAGATAGAATCTTCCTCATCTTCCAGCCAAAATGATTGTACTAATCATTAACAAATCATCATCGTTCTCCCCAGCAACTTATTACAAGAAACTTCTCTA
TTACTACTACATTTTGCATGTCGCTCTTACACAAATAAGTGTCATCAAGATGGCATTATATCATCGACAAGTACATATAGTTAATCATCAAATCACAGAC
AAATCAATTCAAATTTTAAGATAAGTTTAAAACCTCAAATCTCTCCAATGTATACGTCGTCTTATAATCTTATACTATCTTCTAGGTCTTCTTGGGGGCA
AACTTGGCCTTGATCTTGTCCACCTCCTCGTCGTCGATCTGGAAGGCCTTGGCGAGGACGGCGTCGGGCACCGCCGGCGAGGCGGCGAAGAGCGTGGCGG
CGATGGACTGCGTGCCGGGGAGCTGGCTGTTGAAGGCGGAGACGACGGCGGCGGGATTGCCGCCGACGTCGCCCTGGGAGATGGTGCGGGAGAGGAGCTT
GTTGGCGGTGGTGACGAAGCCGACGTCGAGCTCGCCGTAGAGGACGAAGACGACCTCGGTGGCGCGCGGGTGGGTGTGCGGCGGGTTGAGGCCGCCGGGG
GCGTAGTCGATGCGGGCGAGGGAGACGCCCAGGGTGTTGAGCCCCGGGACCTTCTCGACGTTGGCGCCGGTGACCACGGCGCCGGTGGTGGTGTCGGCGA
CGCAGATGTCCTGGAGGTAGTCCGGGTCGCCGGCTAGCGACGGCGCCGCGGCGACGGCGAGCGCCACCGCCACCGCTCCGAGGAGCAGAGAGGACCACGA
CGACCCTGCAGCCCCAGCCATCCTGCTCGCTGATCTCTCTCGCCTGCTAGCTGCGCTCTGCTCTTCTTCTGCTCGCCGATGGTTAATTGATTGATGTGTG
TTGACCACTT