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Detailed information on CNT30574663

BLAST search results

BLAST vs Swiss-Prot:
sp|P10707|CB2D_SOLLC, E-value = 7e-41

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30522444	Oryza barthii	Setaria italica	42.28	59.28	88.22	348	forward
CNT30187536	Oryza barthii	Secale cereale	58.81	55.63	92.36	484	forward
CNT30301046	Oryza barthii	Triticum aestivum	58.81	58.52	92.15	484	forward
CNT30393967	Oryza barthii	Triticum turgidum	43.26	59.33	93.82	356	forward
CNT30552306	Oryza barthii	Oryza glaberrima	65.37	83.28	99.07	538	forward
CNT30251938	Oryza barthii	Avena sativa	58.44	60.81	90.64	481	forward
CNT30665949	Oryza barthii	Triticum dicoccoides	58.81	56.94	93.18	484	forward
CNT30473044	Oryza barthii	Saccharum spontaneum	59.66	55.73	91.24	491	forward
CNT30129613	Oryza barthii	Corymbia citriodora	51.15	57.51	91.69	421	forward
CNT30685781	Oryza barthii	Triticum urartu	48	45.3	91.65	395	forward
CNT30369202	Oryza barthii	Oryza glumipatula	68.04	62.85	98.93	560	forward
CNT30499073	Oryza barthii	Digitaria exilis	43.99	48.59	87.57	362	forward
CNT30115779	Oryza barthii	Oryza nivara	63.79	100	99.05	525	forward
CNT30603587	Oryza barthii	Oryza punctata	61.85	100.2	93.52	509	forward

Expression of CNT30574663

Peptides detected in this lncRNA

>peptide 1 (84 aa)
PGTNQIKIILHNQVHCTSFINQPDNIVLHNLNERSKYSGTRKEENVARLTAACMKAMDLTAVARRRSTLTCRGRSWWRRPMRCC*

>peptide 2 (74 aa)
MAWTKNPNMENMARRPFLISFTLSSANASGSSARSSGKTQPSAPSXAHRQWITSSSRFLANVSGSAESPAVSHP*

Sequence

>CNT30574663
CCAGGAACAAATCAGATAAAAATTATTTTACACAATCAGGTCCATTGTACTTCTTTCATCAACCAACCAGATAACATTGTTTTACACAATCTGAACGAAC
GAAGCAAATATTCGGGTACGCGGAAAGAGGAGAACGTCGCGCGTCTCACCGCAGCCTGCATGAAAGCAATGGACCTCACCGCCGTTGCTCGCCGGAGATC
CACACTCACTTGCCGGGGACGAAGTTGGTGGCGTAGGCCCATGCGTTGTTGTTGACGGGGTCGGCGAGGTGGTCGGCCAGGTTCTCCAGTGGCCCCTTGC
CGGTGACGATGGCCTGGACGAAGAACCCGAACATGGAGAACATGGCGAGGCGGCCGTTCTTGATCTCCTTCACCTTGAGCTCGGCGAACGCCTCGGGGTC
GTCGGCGAGGAGCTCCGGGAAGACGCAGCCGAGCGCGCCCAGCATNGCCCACCGGCAGTGGATCACCTCCAGCTCCCGGTTCTTGGCGAACGTCTCCGGG
TCGGCGGAGAGCCCCGCGGTGTCCCACCCGTAGTCGCCGGGGAACTCGCCGGTGAGGTAGGACGGCGGCTCGCCGGAGAGCGGGCCGAGGTAGAGCACGC
GGTCGGCGCCGTACCACGGGCTCCCCGACGCCGCGGCGGGCTTGGGCTTGGCCGCCGACTTGCGCATCGTGACGCGGCCCTCGCCGAACACCTTGGCATT
GGCGACCGCCTTGCCGGCGAGGGCGGCAGGGGAGGAGAGTGCCATGGTGGACGCCGCCATTGACGCGAGCCTAGGACTAGGAGGAGATGGCCACAGATGC
TTTTGGAATGTGTGTCTTTTGAG