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Detailed information on CNT30574657


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT000270, E-value = 9e-169

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690639Oryza barthiiOryza sativa100.1791.1199.01605forward
CNT30110762Oryza barthiiOryza longistaminata62.4279.8787.8377forward

Expression of CNT30574657

Peptides detected in this lncRNA

>peptide 1 (64 aa)
ALAATSPASYHRRRCSCLRRRRRRRRFSRRRPSPPHPLVSLRGLLLDAAASIRDEKAPDSTGSS*

>peptide 2 (45 aa)
PSRHISCVLPPPALFLSPPAPPPPPVQPSSSFATPSARLLAWLAA*

Sequence

>CNT30574657
GCCCTAGCCGCCACATCTCCTGCGTCCTACCACCGCCGGCGCTGTTCCTGTCTCCGCCGGCGCCGCCGCCGCCGCCGGTTCAGCCGTCGTCGTCCTTCGC
CACCCCATCCGCTCGTCTCCTTGCGTGGCTTGCTGCTTGACGCTGCTGCATCGATCAGAGACGAGAAGGCTCCAGACAGCACAGGAAGCAGTTGAACAGG
AGTAACAAGGGAAGGAAAAGGTATGGAGGGTTCCAACGTTGGAGGAGTTGAGTCGGAGTATTGAAGGAGTTAAAGCAAGTACAAGACGGACTTGTACCAA
ATGACATTGATCGGCATGGGGCGGGAGTAGCACCCTTGGACTACACATTATTATTGCACACTATTGGAATTTAGTTTTAGATTATGTTTCTGCTTAGCAT
AAGTTTTGCGTAGAACTTGTAACGGTCATTTAAAGTTCCGGTCCTTATTTTCACGTGGAATTTGAGGAGCTAGGATGGTTTGGATTGTGTGGATTATATC
GTTATTGAGTTATCTTATAACTGACTGTCGTGGATGTCCGTAATTTTAGGAGGAGACTGCCGAAATTTCTAATAATTTTCGGAGTTAGTGGTTTTTGAGT
GTAT