Detailed information on CNT30574636


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690084Oryza barthiiOryza sativa46.7357.0497.38458forward
CNT3099728Oryza barthiiOryza rufipogon75.178.1398.51736forward
CNT30603565Oryza barthiiOryza punctata62.1421.3988.67609forward

Expression of CNT30574636

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MSCSRKIINQASPSKKKLQHQQRQQEKKASMA

>peptide 2 (40 aa)
CIKCVHKEVNRCVLTYTKISGYKPVQYIANLHLKQKKKIT*

>peptide 3 (66 aa)
MRLYITPYGYKVLAPPIESGCDDIFALICWPGGVFGSGCGKGCGGALGSGCGKGCGGALGSGCGKG*

>peptide 4 (95 aa)
MVVGLVAAKAVVAAAVVAEVVVVAVAVGVVVAVDLGLAGAMVAAVALGLEAAVTCAVALLTSAPDELQQEDHQPSFPQQEEAAAPAEAAGEESKHG

Sequence

>CNT30574636
TATGCATCAAATGTGTACACAAAGAGGTAAATAGGTGTGTATTAACATACACAAAAATATCAGGGTACAAGCCAGTGCAGTACATAGCAAACCTCCATCT
CAAACAAAAAAAAAAGATAACATAGCAAACCTATCAACATGGCAATGTGTATATACGTGCAATCTAAAAATGGTAACTCAGCACACGCTTATTTACAACA
ATAAGCCTCTCCGTACTATCAAAACATATAGAAGAATAGGCTAAACAATGGCATGAGATTGTATATTACACCGTATGGATATAAAGTTCTGGCTCCACCA
ATAGAATCCGGCTGTGATGATATCTTTGCATTAATTTGTTGGCCAGGAGGCGTGTTTGGGTCTGGTTGCGGCAAAGGCTGTGGCGGCGCGTTAGGGTCTG
GTTGCGGCAAAGGCTGTGGTGGTGCGTTAGGGTCAGGTTGCGGTAAAGGTTGAGGGTTGTTTGGGTCTGGTTGCGGCAAAGGTTGTGGTGGCGCGTTCGG
GTCAGGTTGTGGCAGAGGCAGTGGTGGCGCGTTTGGGTCTGGCTGCGGCAGAGGTTGTGGGTTGTTTGGGTCAGGCTGCGGCAGAGGCAACGGCGGCGCG
TTCGGGTCTGGCTGAGGTAAAGGCTGGGGATTTGGGTTTGGCTGTGGTAACGGCTGGGGGTTTGGGTTCGGCTGCGGGCCGGGTTGCGGTAATGGTTGTG
GGCCTGGTAGCGGCAAAGGCTGTGGTTGCGGCTGCGGTTGTGGCAGAGGTTGTGGTTGTGGCTGTGGCTGTGGGAGTGGTTGTGGCTGTGGATTTGGGTT
TGGCTGGGGCAATGGTTGCGGCTGTGGCCTTGGGTTTGGAAGCTGCTGTAACTTGCGCTGTGGCCCTACTAACCTCGGCACCTGATGAGTTGCAGCAGGA
AGATCATCAACCAAGCTTCCCCCAGCAAGAAGAAGCTGCAGCACCAGCAGAGGCAGCAGGAGAAGAAAGCAAGCATGGCG