Detailed information on CNT30574634


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3067061Oryza barthiiLeersia perrieri28.3838.1886.58544forward
CNT30369708Oryza barthiiOryza glumipatula21.4422.9296.84411forward

Expression of CNT30574634

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MPMKRIPGAYSSVVVRRADRLNTNVECSKLK*

>peptide 2 (35 aa)
MIISPPCRLGRGEEKSARRECDLPKEEEKPMHRRG*

>peptide 3 (34 aa)
MMMAGQGSPYIWCINIRTNHPITRIREPYIPCRP*

>peptide 4 (51 aa)
PMWHTRVTMMLASLIKNFFARPHMSLLYHPSETTRNFKLFKKIKNYSDICH*

>peptide 5 (39 aa)
MLPSDPYKKWCIFNRSPRYLDRLIPSGTPHLSRVRHPAN*

>peptide 6 (72 aa)
MNTGTQPWTNLPPRKEARVGTCQLAVVHYFSFDHRKLRQVSHLIMLIEIILFQLKNLFHKNISPSIASIYIF*

>peptide 7 (52 aa)
MSNIPLQYINNNNMEILLKKHHYKQSACIHKLTLIIQYIIYLNIRLHRTYIA*

Sequence

>CNT30574634
CCCATGTGGCACACACGTGTGACAATGATGTTAGCAAGTTTAATTAAAAATTTTTTTGCTAGACCACATATGTCATTATTGTACCATCCTTCTGAAACAA
CCCGGAATTTTAAGCTATTTAAAAAAATTAAAAATTATAGTGACATATGTCATTAATTAATCAGTTAACTAGCAAAATTATTGGAAACAAGAATAAGCCA
CTCAAAATTTATAACAGTCACATCTGTTGAAGTAAAACAAATAAATAATGTCCAATATACCACTACAATATATTAATAATAATAACATGGAAATATTATT
AAAAAAACACCACTATAAACAGTCAGCATGTATACATAAACTTACACTAATAATACAATACATCATATATTTGAATATACGGTTGCACAGGACATACATA
GCTTGACCCCTTTTATGCACAAAAGGTAATATGTAAATAAATGTTGCCGTCAGACCCATACAAAAAGTGGTGTATATTCAACCGTTCACCGAGATACCTA
GATCGGCTAATACCGTCTGGCACCCCTCACTTAAGTCGGGTTCGTCATCCGGCTAATTAACACAAAGAAGCCGCACATCTCAAATAAAGAATTAATCTCA
CCAAAGGGACCTCAATTCACCAGAAGTATTAATTTTCCACCAATCACATAGCTCCACATAGGAAGCTTCACACAAGACCACAAAGATAGTAGCACAACTT
CAGCCACCTTAGTCAAGACTCTATCTCACCTTGGTCAAGCACTCAAAGCATGGCCACAGCAATGGCAGCAGATGCATGCATATGAGCTCCAACCAATTAG
TGAGGAGTGAGCAGCTCAGGAGAGGAGGAGGAGAGAAGTAGGGAGTGAGGGAATAGCCAACAAATCAGCGAAATGCAAGATTGTGCCCCATCCATTGCAA
GCACCAAATCTCGAATCCCCAATAATCAGTAGCCAATAGTTCTTGGCCAGATGATCATATCACCACCATGCCGACTAGGAAGAGGAGAGGAGAAATCGGC
AAGGAGGGAATGTGATTTACCCAAGGAAGAGGAAAAGCCAATGCATCGGCGAGGATGAACACGGGAACACAGCCATGGACGAACTTGCCACCTAGGAAAG
AAGCTAGAGTTGGAACCTGTCAATTGGCAGTAGTACATTATTTCAGTTTCGATCACAGAAAACTCAGGCAAGTCTCTCATTTGATCATGTTGATAGAGAT
AATTCTATTTCAACTTAAAAACCTATTTCATAAAAATATTTCTCCTAGTATTGCATCAATATATATTTTCTAGAATAATGATATGAATGATGATGATATG
ATTGACAAGCCGATGATGATGGAGATCATCGGGATACTAGTATGGTGGGTAGGAGGAGCTCAGGGATGAGATGATTGATGATGATGGCAGGTCAGGGCTC
TCCCTACATATGGTGTATAAATATAAGGACTAATCACCCCATCACTCGTATCAGAGAACCGTATATACCGTGTCGACCATAGATCTATCTTAAGATGGGC
TGGACCTAATACCTTATCAAGTTTATTATACTCCACATGGGTACGTAGTAGTAGAATGGGAGATGATATAAACCCCACGAATGCCGATGAAGCGCATTCC
AGGCGCATATAGTAGCGTGGTGGTGCGGAGAGCTGATAGGCTCAACACAAACGTGGAGTGTAGTAAATTGAAGTAGGGGAAAAGTTATGTACTCTTAGCA
TGGTGCCGCATCTAGTGAAGTGTGACAATCAAACATGTTAAGAGTAGCTATGGGTACAGTGATACAAGCCTGCGCAGTGCTAAATTAAATCGTGATTCAT
GCCTGTCTCCTGGATTGGAGTCTACGGGGAGTTGCTACAAACTCTATTCAATGTTACGAGTGTACTCTAGCTTTTATAAATCTCCTTCTGAAAACTCTTT
TACAAAATAGAAATATA