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Detailed information on CNT30574631


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30554117Oryza barthiiOryza glaberrima63.5875.0998.48660forward
CNT30102269Oryza barthiiOryza rufipogon23.5116.3897.13244forward

Expression of CNT30574631

Peptides detected in this lncRNA

>peptide 1 (49 aa)
MAPYSQGKLPGARSMLTTPLPAAANVPAHCRWLGSGAHHGPSKRTTVSR*

>peptide 2 (71 aa)
MCLHTAVGWEVVLTMGHRRGRRSRGRLPGWGGGACRVPLEACALAVGRAEEVASLAVGEWLAEGAAVAMES*

>peptide 3 (83 aa)
SSTTPELHHKEVKAHPKALAHGAILSRQAAGSEVDAYHAIASCCKCACTLPLAGKWCSPWAIEEDDGLEVGCRGGAAVLAGCH*

Sequence

>CNT30574631
TTTCCTCAACCACTCCTGAACTGCATCACAAAGAAGTGAAAGCACATCCAAAAGCTCTTGCACATGGCGCCATACTCTCAAGGCAAGCTGCCGGGAGCGA
GGTCGATGCTTACCACGCCATTGCCAGCTGCTGCAAATGTGCCTGCACACTGCCGTTGGCTGGGAAGTGGTGCTCACCATGGGCCATCGAAGAGGACGAC
GGTCTCGAGGTAGGCTGCCGGGGTGGGGCGGCGGTGCTTGCCGGGTGCCACTAGAGGCTTGCGCACTTGCCGTGGGGCGTGCTGAGGAGGTCGCATCGCT
TGCTGTGGGAGAGTGGCTGGCGGAAGGAGCTGCGGTCGCCATGGAGTCTTAGAGCAGGGAGAGGTCATACAGTCCTGATGGATTAGGTTGGGCTTGCTCT
GGATCGACCAAGCCTGTCACAGGTGAATGTCTAACTGCTTAATAATCTTTTTCTTGTACTATAATGTATACACACCATAAGCATAGATATATTGTGAAGA
TTGCAAATGGAAATATTAATGACATTGAACTGCAGATCGAGATGTAAAAAAAGCCCAATTTTGTGCCTGAGTGTTTGCTCTATATAAATAAAAGAAAATT
TCAAGAACCAATCCATATGTTGAATATATTTATAATAAAGGAGGACAACTAAGATAGAAAATATCAAAAACTTATTCTAGTTTCTACAGATCTAGAAATG
CTTGTCTTGCAGATGTTCTGATGGGTCATTGGGGACCTGCAAGATTGGTGTACAAATACATTAGTTGGGATGAAGTGTGAAAAAAATATAACTTGGATAT
GACCATGTTTAAATGGACTGATACCTCACTTGGCATCTGATCATTCTCATTCGACACGGTGAAATTAGGAATTACTTCAGATGTTGCAGAAGTTCCACCA
GCATTCTTGTCCACTTTAGATTTACCTGTCAGATTTAAAATTTATTAGCCCTTTATATATAATTCACTATATGCAGTATGTATCTTTGTAATTAATAAAA
AAACCTTTCTTTGGCTGCTTTTTCTTGTTCGATTGAAG