Detailed information on CNT30574627


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT000177, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30552286Oryza barthiiOryza glaberrima10085.51100584forward
CNT3066724Oryza barthiiLeersia perrieri22.2644.5287.69130reverse complement
CNT30595465Oryza barthiiOryza meridionalis97.0995.1395.24567forward
CNT30369297Oryza barthiiOryza glumipatula99.6692.9799.31582forward
CNT30106043Oryza barthiiOryza longistaminata49.3281.1397.92288forward
CNT3099917Oryza barthiiOryza rufipogon100.1785.6599.66585forward
CNT30115788Oryza barthiiOryza nivara100.1791.1298.97585forward

Expression of CNT30574627

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MYVCCENKMIEILYSVMFILTSWLKFGINYFWKQRH

>peptide 2 (66 aa)
RPLSPIYKPPDNISRRNRPLWIYTSTEEQVNIIDRELKPTRSRQAKYGSCRESGEGGMVQGRCRHS*

>peptide 3 (50 aa)
MDPAERVVKAAWYKGAVVTHRPKPVSPIVNQSKNKNKQAKKPKPAAPSKK*

Sequence

>CNT30574627
CGGCCATTAAGCCCCATATATAAGCCTCCTGATAATATCAGTAGGAGAAACAGGCCATTGTGGATATATACAAGCACAGAAGAACAAGTAAATATAATCG
ACAGAGAACTGAAGCCGACGAGGTCTCGACAGGCGAAATATGGATCCTGCAGAGAGAGTGGTGAAGGCGGCATGGTACAAGGGCGCTGTCGTCACTCATA
GGCCGAAGCCTGTTTCGCCTATCGTTAACCAGAGCAAGAACAAGAACAAGCAAGCCAAGAAGCCCAAACCAGCTGCACCCAGCAAGAAGTGATAAACTTA
ACTGGCTGCCTGCCTCTACTACACAGTATGTATGCAAACCGAAAGACTGGCTAATTAGGGGGTTTAATCTTCAGGATTCAGTTCAGGTTTGAGCTGAACA
CTGAAGAAGTGAAGAGTACTTGGATACAGTTAATTTTACCTGTTCAAACTTCAAACAGTCCTACAGGATGCCGGATGTATGTGTGTTGTGAGAATAAAAT
GATTGAGATACTATACTCTGTGATGTTCATATTGACCTCCTGGTTGAAATTTGGAATAAATTATTTCTGGAAACAAAGGCATTA