Detailed information on CNT30574625


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT001369, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697308Oryza barthiiOryza sativa79.9644.8292.37826forward
CNT30106623Oryza barthiiOryza longistaminata79.1975.3291.08818forward

Expression of CNT30574625

Peptides detected in this lncRNA

>peptide 1 (42 aa)
RKGEEIDNPAAATNPSRHHPNRCCAVAAGSAIAVQRHSCSTP*

>peptide 2 (84 aa)
EKGKRSITLQPLQTLAAITPIAAAPSPQVQPSPSSATPARLLESRSFKKQVKQEEKRRKKEREAKVGDFLGVEGSNVGGVESDY*

>peptide 3 (33 aa)
MLRIHISLHVQIHDVIHVSLFQKFLFTLFKYHA*

>peptide 4 (96 aa)
MLEELSRIIEGVKASTRWTCVMDKLCYFIWFHLSNYYSKLPIINCVILVLCYVFIFHFMFKFTTLFMFHYSRSFCLHYSSTMRSHGSAIWIFIHDP*

Sequence

>CNT30574625
GAGAAAAGGGGAAGAGATCGATAACCCTGCAGCCGCTACAAACCCTAGCCGCCATCACCCCAATCGCTGCTGCGCCGTCGCCGCAGGTTCAGCCATCGCC
GTCCAGCGCCACTCCTGCTCGACTCCTTGAGAGCAGGAGTTTCAAGAAGCAGGTAAAGCAGGAGGAGAAAAGAAGGAAAAAGGAAAGAGAGGCAAAAGTT
GGGGATTTTCTGGGTGTGGAGGGTTCCAATGTTGGAGGAGTTGAGTCGGATTATTGAAGGAGTTAAGGCAAGTACAAGATGGACTTGTGTGATGGATAAA
CTGTGTTACTTTATTTGGTTTCATTTATCCAATTATTATTCGAAGCTTCCTATAATCAATTGTGTGATTTTGGTATTATGTTACGTATTCATATTTCACT
TCATGTTCAAATTCACGACGTTATTCATGTTTCATTATTCCAGAAGTTTTTGTTTACATTATTCAAGTACCATGCGTAGTCATGGGAGTGCAATTTGGAT
CTTCATTCATGATCCTTGAGAAGCGCTGATCACGCTTGCTCGGCTTACCGGTAATGCTAAGAGGATATTCACACCTGCCCAGGAGGGAACTACTACTTTT
TGCCTCCTTCCTTTTAAATTAAAGGAAGACAAATATTTCATATTGGTTTTCTTATTGTATTAAACCTGTGTTTGTTTTACTAGTTCAATATTGTACTTGC
TGAGTATTTTTACTCACTCTTGTTTAATTTGGTTTTTAGGTACCTAATGATATTGATTGGCATGGGACGGGAGTAGCACCCTTGAACTACACATTATTAT
TGCACACTATTGAAATTTAGTTTTAGACTATGTTTCTACTTAGCATAAGTTTTGCGTAGAACTTGTGAAGGTCATTTAAAGTTCTGGTCCTTATTTTCAC
GTGGAATTTGTGGAGATAGGATGGGTTGGATTGTGTGGTTTATATCGTTATTGAGTTATCTTGTAACTGCCTGTCGTGGATGTCCGTATTTTTAGGTGAC
TCTGCCAAAATTTCTAATAATTTTGGGAGTTAG