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Detailed information on CNT30574622


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT006839, E-value = 7e-133

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690199Oryza barthiiOryza sativa10082.9397.79724forward
CNT30370810Oryza barthiiOryza glumipatula61.7479.9697.09447forward
CNT30110252Oryza barthiiOryza longistaminata38.6798.5998.57280forward
CNT3099738Oryza barthiiOryza rufipogon10082.8497.51724forward
CNT30551241Oryza barthiiOryza brachyantha60.9179.3282.77441forward

Expression of CNT30574622

Peptides detected in this lncRNA

>peptide 1 (46 aa)
PSPKLSIHPNILHMHGELREIEIGEESGGFSLHGCSSNMTLFPSIC*

>peptide 2 (58 aa)
ITQAFHPSQHLAHAWRVERDRNRRREWWFQPAWLQQQHDFVSLHLLGGGCSSSGVNLF*

>peptide 3 (32 aa)
MSYASCVVIALPRAARAMSDLLQLGSCPVGLP*

Sequence

>CNT30574622
CCATCACCCAAGCTTTCCATCCATCCCAACATCTTGCACATGCATGGAGAGTTGAGAGAGATCGAAATAGGAGAAGAGAGTGGTGGTTTCAGCCTGCATG
GTTGCAGCAGCAACATGACTTTGTTTCCCTCCATTTGCTAGGAGGTGGCTGCAGCTCATCCGGTGTTAATCTCTTTTGATTTCGGTTGAAGCAGCCCTAG
GCAGCATCTCTTACCATCAGGCCGAGGCCTTGCTCCGTCTCTTGCCATCAGCCCGAGGCCTTAGCCTCGCACGACCCTACGTCCAGGTTGCTACCATGTG
AGCGAAGTCTGGTGGAATTTGGAGAAAAGGGGGAGCGAAAATAGAAATCGATTTCTGAGATAGCTTTTGAGCTGAAAGAGATTCGGAGATTCCGGAGAGT
AACGAGCCATATCCCGAGGAGGATAGTGACTACCCTCAGCAGCAAGGAGAGGATTCCGGTTATGAGTTATGCTTCTTGTGTGGTCATTGCTCTGCCGAGG
GCGGCGAGGGCAATGAGTGATCTCTTGCAGCTTGGCTCTTGCCCGGTTGGTTTGCCCTAGTGGGGTTGTGGCACCACTGGTTTTATCTTTTGCTTATGAA
CTCTATTTGAGACTTCCGCTGCTATATTTATGTGTTGTATGTTGAGACCTTGGACCCTATTATGTGTCATGTACCTCGCCGCACTTTAACCCTATTATGG
TACTTGCTATGTTTATTAATTGCT