Detailed information on CNT30574602


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30552010Oryza barthiiOryza glaberrima66.38100100774forward
CNT3066602Oryza barthiiLeersia perrieri33.9629.5792.17396reverse complement
CNT30110001Oryza barthiiOryza longistaminata67.7598.7597.47790forward
CNT3099937Oryza barthiiOryza rufipogon62.3552.699.72727forward
CNT30550519Oryza barthiiOryza brachyantha45.4542.390.19530reverse complement

Expression of CNT30574602

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MLRNMLRKIPHFGLRKGTPPPKLPLCERNFMYSL*

>peptide 2 (29 aa)
KTNFPAHASSRYSNTSRVYSSSKLLFINL*

>peptide 3 (39 aa)
MNSKHGEIKDLIKLPLPENLVARRLHAFLGMTNVVWSDL*

>peptide 4 (55 aa)
MSSPSYRSLTRCTPGYLSSIWYGGPRGHDAVRFRGFPRPEHPSPRRPLWMLGMVR*

>peptide 5 (56 aa)
MTICYYEHGNDYDSPFHHLVLIPGVSMTTLYRLLVPYQCIKKMVCISMYELETRRN*

>peptide 6 (63 aa)
MKPSTASSMEDPSSGFLSTPNNGLTPLPCMQPMQCSHYFSASPVVLKTMPQRPMQRRYPLGRC*

Sequence

>CNT30574602
CCAAAACCAACTTTCCAGCCCATGCTTCGTCAAGGTACTCCAATACATCTAGAGTGTATTCATCATCTAAATTATTGTTCATAAACCTATAGGCCCCAAA
AAGCACACAAAAGCATGGAATATACTTTGAAAAACTCCAAAGCAAATCAAAAGCATAGAACAGAAAAAGAAGTTTCCACATGCTAAGGAATATGCTAAGG
AAGATACCTCATTTCGGTCTGCGAAAAGGCACTCCACCACCTAAGCTTCCACTTTGTGAAAGAAACTTCATGTACTCTCTATAAATGAAACCAAGCACAG
CATCTTCCATGGAGGACCCTTCTTCTGGATTCCTCTCTACCCCCAACAATGGCCTGACACCGCTGCCCTGCATGCAACCCATGCAGTGTTCTCACTACTT
CTCAGCTTCGCCGGTGGTGTTGAAGACGATGCCTCAACGGCCGATGCAGCGAAGGTATCCACTAGGCAGGTGCTAGGCCATGTAGGGCAACTAAACAACT
TTGGCAGGTCTTCCTTCTCCATCTCGACAAGAAGATGGAATTACCTTCTTCGGCACAGTCTGGAAGCATCAGCTAGGTGCTGACCTAAAATAGTTATCCA
TAGATCCATAAGTCAATGAGCATGCCACAGCTCTGAAGCATAAAACATATAGACCTACACAAATACTTGTCAGAATTTATGAGTTATGACAATATGCTAC
TATGAACATGGAAACGACTATGATTCTCCATTTCACCATTTGGTTTTGATTCCAGGAGTTAGCATGACGACATTATATCGACTTCTTGTTCCCTATCAAT
GCATCAAAAAAATGGTTTGCATTTCCATGTATGAACTCGAAACACGGAGAAATTAAGGACCTAATAAAATTGCCATTACCAGAAAATCTAGTAGCTCGAC
GCCTCCACGCTTTCTTAGGGATGACCAATGTGGTGTGGTCGGATCTCTGAACCTCCCCGCGAGCCTCTGCTGGAAGCTGTTCATGTCCTCCCCTTCGTAT
AGATCTCTAACGAGATGCACGCCGGGCTACTTGAGCAGCATCTGGTACGGCGGCCCTCGCGGACACGACGCCGTACGGTTTAGAGGATTCCCCCGACCCG
AGCACCCGAGCCCCCGACGGCCCCTGTGGATGCTGGGGATGGTGAGATGATGCGCGTTAGTGGCCG