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Detailed information on CNT30574590


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8L4L4|RL52_ORYSJ, E-value = 2e-35

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30115661Oryza barthiiOryza nivara32.9983.9494.43413forward

Expression of CNT30574590

Peptides detected in this lncRNA

>peptide 1 (57 aa)
MVGSARMAAWTFLYSDSMPSASIPFLRAPKTRFPVVVLMRPTSKRARKGLLSSAGST*

>peptide 2 (51 aa)
MGVGSSHHDITRNGSIDNLSCDIFDTNLTTKRYFGVLYLFLSWLVSLILAL*

>peptide 3 (44 aa)
MDITNNLYKIISQLNIPLVGSRFLLGRFGHGRISADGSMDLLVQ*

Sequence

>CNT30574590
CTCATCTAGTGTGTAAAGCGCCCAAGGGAACTCCAGTTTAGGACAATGCAGGCAAGAAGACCTGAAGATTGACTGCCCGTTGCTAAAAAGGAAAAAGTAA
CATAAAACACTGACAAGTGAAGAGCCAGGCAGAACAAATTTTGATCAATATCCAAACGGCAGCTTCTCACATAAATAAGATAACCGATAGCTCCAGGTTG
AGAACCAAAAACCGAAAGAAATAGGTTCTTTGAGCAGAGTGCAGAACATAAACAAAAATGCCTGTTGCAAATTGCAAGACTACAGGTAAACTTAAATGCC
ATATGGAGTTTGTTTGGCAGCATAAGATGAAACTACTGTGATAAGGCTACTCTCTCACTCGTCATCCTCTTCCTCGTCATCATCATCAGCACCAGCTGAG
GAGTTGAGAGCATTCAATCTTTCGACGAGACTGGCCTTCCTCTGCTCGTAGGTCAGCTTCTTGAGGTTGTATCTGCAGCAACGAGGCAAGTTAGTTACAT
CATACATGGACATCACAAATAATCTTTACAAAATCATCAGCCAGCTTAATATACCTCTTGTGGGTAGCCGGTTCCTTCTTGGTCGATTTGGCCATGGTAG
GATCAGCGCGGATGGCAGCATGGACCTTCTTGTACAGTGATTCCATGCCATCAGCGTCAATTCCCTTCTTGAGGGCACCAAAGACACGGTTTCCAGTGGT
TGTCCTAATGAGGCCAACATCCAAGAGAGCACGGAAAGGCCTCCTTTCATCAGCTGGTTCAACATAGTAGTCCTCCCCAGTGGCCTGACCAAAGGAATCA
TACATATCAAGATCAAGACCAGCATGAGCATATAGAGTAAAAAAATTATAAGGATTATATTTGTACCTCAACATTGCCCTCGTACTCCTGGTCCAAACCA
CGGAGCGTGAGCAGCTCATGGGAGTAGGCAGCAGCCATCACGATATCACCCGCAATGGTAGCATAGACAATTTGAGCTGTGATATCTTTGATACAAATCT
CACAACGAAGCGGTACTTCGGTGTGTTGTACTTGTTCTTATCTTGGTTGGTGAGCCTAATCCTGGCCCTGTAGTCAGTCTTGCCCTCTGCAAACAATGAC
AAATGAGATTAAGTACATCAAAACCTAGCTATATTACAAGCACAGAATGCATGAGCCACATGAAAGGATTATATTGAACTTACGCCTCCGTCTCTTGAAC
TTGACTTGGAAACGCTTGAAGTAGGCATGGGTCTTCTGGGTCTTGACAAACC