Detailed information on CNT30574585


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30552385Oryza barthiiOryza glaberrima78.3850.58100435forward

Expression of CNT30574585

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MPLPSNPISFKRQVAAAATRFSTGHVKALHEMRGRLNDGG*

>peptide 2 (40 aa)
FPFPFPSPSGGIANRRPRTPMAPSRAARRPLLSALRQTPP*

>peptide 3 (77 aa)
VSFPFSFALRRDRQPPPSHPHGPIPRRPPPFALRPSPNAALTSIPLNPGRRCPRSGRRSDPIAPPRPCVATRTAARR*

>peptide 4 (80 aa)
FLSLFLRPPEGSPTAALAPPWPHPAPPAALCSPPFAKRRLDFDPPKPWPPLPAFRSPFGPHRAASPLRRHPDRGQEIEQR*

>peptide 5 (39 aa)
MLRTCHLCMGLVCVGAKLPDRVVPVEFNFQILLPASGLLN

Sequence

>CNT30574585
GTTTCCTTTCCCTTTTCCTTCGCCCTCCGGAGGGATCGCCAACCGCCGCCCTCGCACCCCCATGGCCCCATCCCGCGCCGCCCGCCGCCCTTTGCTCTCC
GCCCTTCGCCAAACGCCGCCTTGACTTCGATCCCCCTAAACCCTGGCCGCCGTTGCCCGCGTTCAGGTCGCCGTTCGGACCCCATCGCGCCGCCTCGCCC
TTGCGTCGCCACCCGGACCGCGGCCAGGAGATAGAGCAGCGGTAGACGTGCGGCGTCTTCCTCCTTAATCCGTCACCTCGGTTTCTTAGTTCCTCCCACC
ATGCCCCTCCCTTCCAACCCTATCTCCTTTAAGCGCCAAGTCGCCGCAGCAGCAACGAGGTTCTCAACGGGGCATGTTAAGGCTCTGCATGAGATGAGAG
GTCGACTCAACGATGGAGGCTGAAAATAAAGCTTGATGTTAAGAACATGCCATTTATGTATGGGTTTAGTTTGTGTTGGAGCCAAGCTGCCAGATCGTGT
GGTCCCTGTTGAATTTAACTTCCAAATATTACTGCCAGCATCCGGCCTCCTCAAC