Detailed information on CNT30574584


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30115455Oryza barthiiOryza nivara83.5287.998.452514forward

Expression of CNT30574584

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MGGMVLVGIRSTLVLGLVHRYLAMVLVPHR*

>peptide 2 (33 aa)
MNLSICRWKLSRLLYQNEQEYFYIRRKITCIQI*

>peptide 3 (34 aa)
MYRDVFSCFGLLILGHPQCASKLGNRQYFNLHTR*

>peptide 4 (36 aa)
MQGVPSKTYVFLSFHKEFLLYICDDKVHVKLIFSFY*

>peptide 5 (43 aa)
MHPLTRSTRPRNDVDASGVVDVEREAHGGDDNECVVVVAAARR*

>peptide 6 (45 aa)
MLSPPYFSHTQMCLRFLLSIPHMTFPLSLSSLILVPFFYTTPLVL*

>peptide 7 (53 aa)
ALTTLFFPHTDVSPLPLIHTTYDLPSLSLFSHSRSLLLYDAASAMKLKHSWAA*

>peptide 8 (67 aa)
MAETTMSVWWWWLPHDGNGHPSNAHGYWVSQNADASLSSLFIHGNLKRKLSPAWRWIYSFNYPETWT*

Sequence

>CNT30574584
ATGCTCTCACCACCTTATTTTTCCCACACACAGATGTGTCTCCGCTTCCTCTTATCCATACCACATATGACCTTCCCTCTCTCTCTCTCTTCTCTCATTC
TCGTTCCCTTCTTCTATACGACGCCGCTAGTGCTATGAAGCTCAAGCATAGCTGGGCAGCTTAGGAATGGCAGCGTGTTCCTGATCGGTCAACAAAGTAG
GGCTCCGGTGAGGCGGCGAGGTCAATGGTGAGGTGGAGCAGCTAAGCCGTGGCTAGTACAGGGTAGCATATCTAATACTGGGCATCAAAATAGATACGCA
CATATATCATTCTACTAACTATATCTATCAGTTGCAGGCCTAGTATCTATGGGTGGTATGGTGCTTGTGGGCATCAGATCTACCCTAGTACTAGGTCTGG
TGCATAGGTATCTGGCAATGGTTCTCGTGCCTCATCGGTGATGAGCAGAGAAGTGGCTGCCGCATGCATCCACTAACCCGGAGCACACGGCCAAGGAACG
ATGTCGATGCATCAGGGGTTGTGGACGTAGAGAGGGAGGCACATGGCGGAGACGACAATGAGTGTGTGGTGGTGGTGGCTGCCGCACGACGGTAATGGCC
ACCCTAGCAATGCACACGGATATTGGGTAAGCCAGAATGCTGATGCTTCACTCTCTTCTCTTTTCATTCACGGGAACTTGAAACGCAAATTAAGCCCGGC
CTGGAGGTGGATATATTCATTTAACTATCCTGAAACATGGACATGACTCGCTCATTTTTTTCTAGTAATTATAATTTTCTTTTAGAAAAAGACGAGTGAT
TAAAATTTCAAAATAAATAATGTCCTAGTTTATTAGCGTGCATATACAGGAAAAACTCCAGCTGTGCGTTGCCTTAGACCAAACGAGCTGGACATTTACT
GCATCTCGGTTTTAACTCACATGAAAAATTCTGGTACAGATTTTTCCTTGAACCAAACGCGCCGATTCTGTGGCTGGCGCTGCTTTGACTGCCTGAGCAC
ATGAACAACGCTTTCTTTGGCTTGTATCAGCAAGTCCTTCCAAAACAATGACACGCCGGGTGCCGGCTCCTCTAGGCTACAGTGACATCTAATTTAGTCG
CATTTTACTTTGCTAACATAAAAATACGTATTTTTATTAGGTAGTAACATATTCTTTTCTGAATTAATATTAACTCGAGAAAATGAATTTGGTCACCTTT
AAGAATTCTTGTTCAATCAAAACATTGGACTTCAATGAAAAGTGAGATATTATTATTGGCACCATGTACCGGGATGTGTTCAGCTGCTTTGGCTTATTGA
TATTAGGGCATCCACAGTGTGCTTCCAAACTAGGTAATAGGCAATATTTTAATCTTCATACAAGGTAATAAGCATTGTGAAACCTGAGACTCATCGACGA
AATATTTTAATCTTCATACCAAGTAATAAGATCGTCATGAGAATTTGTTGCGTCAGCTGGTCCTTTTGTACCTGAAACTCATCGACGAAATATAGTGTTA
GTTACTTAGTTTTTCCTCATGCTATCTTATATTTTTCTCTTGTTTTGCAAGACATTTTCTTCATAGGGTTAATTTTCACTTTTAATCACTTGCGGCTCTC
TTATTTTTTGTATGTTTTCAGAAATACAAGATTTTTTTTTTCATCCACTGTGATCACCTATATATATGAATCTATCAATTTGTCGATGGAAGTTGTCCAG
ACTTCTCTATCAGAATGAACAAGAGTATTTTTATATTAGAAGAAAAATAACATGCATACAGATATAATACGCCGAGACAACCACCTGGGGTTAGGAGGGG
GCATAATCTGGTACACAAGAAGCTAGCTAGGCTAAACTAAGCAAAGCTCCTAAGCTAAGATTGAGATGACGAAGAGAAAAAGAGCTATGTGCCTAACAAC
TCTCTAGTAGGATTGGCAGACGACGCCTCCCATTGCCGACCTTTTTCCACAGTCCGCTTCACCACCGTCAACACTTAAAACATAATACTCCCTCCGTTTT
TAAAATATTTAACACCATTGATTTTTTAGCACATGTTTGCCCGTTCGTCTTATTAAAAAAATTATGAAATATGTAAGACTATATGTGTACATGAAAGTAT
ATTTAACAATAAATCAAATGATATGAAAAGAATAAATAATTACTTATTTTTTTTGTCAAACACGTAATAAAAAGTTAACGGTGTCAAATATTTTGAAATG
CAGGGAGTACCATCGAAGACGTATGTGTTCCTCTCCTTCCATAAGGAGTTTCTTTTATACATTTGTGATGATAAAGTTCATGTCAAATTGATCTTCTCCT
TCTATTAAACATTTAGGCAGCGTGAAATTCTCAAGTCTTTAGGTATTGAATACTTGGTTGACGTGCACAATACTTCTAATAAACAATACATTTGCTCATG
GATTTTCCAGCCCAACCTTATAGCCCAATGTGATAAGAAGCGAAGCGGTGATGGCTGATGGGCCAAAATCCGTCGCAGTTGGCAGCAGGTGAGCGTAAAC
TTGTGCCCATCTAGTTGTGTAGCTGATGGACCAAACCAGGATAGGCTGAAGCAGTAAATTCATATTTCCAATTTGCTCCTAATTAAACTAAATTTTGACG
ATCCTTAATTGGCAGGCAGTTGAACTGCCAACATGTCACGAGCCTACACAAAATTTCATCCGAATACCCTGTGATTATTGACGATTATCAGACAGGTTCT
ATTCAGAAGATTTGTCACAAAGTGAAGCCGAAGTTCCGAAGATGAGTTTGAAACAGTGAAAGGCTGGAAGATTTTGTAAAGGGAGAGTGTTCGGCTTGAA
GGAAAAAGTTCAAGGTTCTCACGTGGAGATTAGAAGCTTGCCAACCTGATCGTCTCGTTGTTTCTTGAAGATTGAAATTATCCGAAAACTGAAACTGTAA
TGTAAATCTGAACATCTGTCAAGTACTGTGTTTCCAGCTAGTATATGAACAATCCAAGCACCTACATATAATGTACAGAAGAATGCAGCTAATCATCTTA
TTAATCTGAA