Detailed information on CNT30574579


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690471Oryza barthiiOryza sativa49.2689.6699.57234forward
CNT30455220Oryza barthiiSaccharum spontaneum56.6335.3582.16269forward
CNT30363793Oryza barthiiSorghum bicolor27.7927.7984.85132forward
CNT30369328Oryza barthiiOryza glumipatula80.2168.2895.28381forward
CNT30497518Oryza barthiiDigitaria exilis27.3720.9784.62130forward
CNT30557683Oryza barthiiPanicum hallii27.7936.5785.61132forward

Expression of CNT30574579

Peptides detected in this lncRNA

>peptide 1 (31 aa)
TSFIIFRSRIYFSYTPLSVRSDRTEKKVLIS*

Sequence

>CNT30574579
GACAAGCTTTATTATATTCAGGTCACGAATTTATTTTTCATACACCCCCCTCTCTGTTCGTAGTGATCGCACAGAGAAGAAGGTGCTAATTAGCTAAGCT
CCGTGTACGCACGTTCGATCAGTCGGACTTGAGCAGGAAGCTCTGCTTGCGCTCGCGGAACTCGCCGGTGCAGGTGTTGAAGTCCTCCTCCACCTTGGTC
TCGCGCACCATCAGGTAGTCGTTGCCGTGGTTGTGGTTGTGGTTGTGGTGGTGGCGGCCGGAGCCGGACCTGTCGATCTCCTGGAACGTCTCCTTGACGA
CGTGCTGCTGCTGCACGCCGCCGCGGCCGAGGAAGCCGCCGGTGGGGGTCACCGACCTCACCTCCTCCGAGCAGTAGTCCACCTCCTGGTAGTGAGCCAT
TGTTTTTTAGTTGGGGAGTGAGGTGAGGTGGTGTTGTGATGAGCGAGAGATGGTTAATTAGGGTTTTGGTGGTGT