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Detailed information on CNT30574577

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30690462	Oryza barthii	Oryza sativa	34.42	50.74	99.64	274	forward
CNT30555942	Oryza barthii	Oryza glaberrima	33.29	39.79	100	265	forward
CNT30369360	Oryza barthii	Oryza glumipatula	44.22	45.71	93.75	352	forward
CNT3099818	Oryza barthii	Oryza rufipogon	51.13	48.74	94.1	407	forward
CNT30115572	Oryza barthii	Oryza nivara	34.92	30.28	99.64	278	forward

Expression of CNT30574577

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MGKVCLLVIDENLFNGILLVAIVVIMFMLLAAAASACTD*

>peptide 2 (42 aa)
MASSSSPSSSSCSCCSPPRLLRVLTDRPASETMNNTAGAGRA*

>peptide 3 (54 aa)
MSWRTLQFIKVELLVASGNGGLSVELLCNLYQYILYIVTTDIYLRFIASYRLMG*

Sequence

>CNT30574577
AGTTGACCCAGAAAGAGAGACAGAAAGCATCCATTCTCTCACACACACCTCGATAAGTCGATATAAATAGAGTAAGATGATTAGTGTAGAGAGAGATCAT
TATTAGCATTCGATCTGCTTCTTCGCCATCGAAGTAATTAATCAAATCGGAGGAGATCATTAGCAAATTATCAGCTTGGCTTCATGGGGAAGGTGTGCCT
TCTCGTCATCGACGAGAACCTCTTCAATGGCATCCTCCTCGTCGCCATCGTCGTCATCATGTTCATGCTGCTCGCCGCCGCGGCTTCTGCGTGTACTGAC
TGACCGGCCGGCGAGTGAAACCATGAACAACACTGCAGGTGCAGGTCGAGCTTGATTTCTAAGCTTTTAGTTCTTGTGTTTTTTTTTCTCCTTTTTTTTT
CTTTTTCTTTTGTCCGTGCGATGAAGCTAGCTCGTGATTTCTTCTTCTTCATGTTTTCGGGAGTAATTAATTAACGTGTTCTTGTGTAGAAATATATGTG
AAGGATTTTCTGTTTGATCAGGGCATGTCTTGGAGGACTTTGCAGTTCATAAAAGTTGAGTTGTTGGTGGCAAGTGGCAACGGTGGTCTCTCTGTAGAAT
TGTTGTGTAATTTGTATCAATATATATTGTATATAGTAACAACGGATATTTATTTGAGATTCATTGCATCTTACAGGCTTATGGGTTAGTTACTTTGTAT
TGATTTCTTTGAATAATAGTGGTTTATGTGACCCAACTGTTAACGATAAAATTTGATTTTTTACATCAACACCAACATAAACCACTTCTCCTTCTG