« Back to Vitis vinifera search


Detailed information on CNT30574574


BLAST search results

BLAST vs Swiss-Prot:
sp|Q36284|NU5M_MAIZE, E-value = 3e-76

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30530066Vitis viniferaEucalyptus grandis5.4129.3189.01182reverse complement
CNT30619448Vitis viniferaSesamum indicum14.3242.3696.68482forward
CNT30197509Vitis viniferaPisum sativum28.3741.9696.23955forward
CNT30633270Vitis viniferaCapsicum annuum15.7563.795.28530reverse complement
CNT30182368Vitis viniferaSecale cereale1524.996.44505forward
CNT30299594Vitis viniferaTriticum aestivum13.3159.2696.43448forward
CNT30221864Vitis viniferaHordeum vulgare20.0533.2594.81675forward
CNT30385170Vitis viniferaTriticum turgidum1535.8995.84505forward
CNT30586133Vitis viniferaMusa acuminata19.9630.3989.58672forward
CNT30541214Vitis viniferaBrassica napus9.21101.9792.9310reverse complement
CNT30147395Vitis viniferaMedicago truncatula27.922.195.74939forward
CNT30439823Vitis viniferaAegilops tauschii8.5664.4393.4288reverse complement
CNT30468144Vitis viniferaSaccharum spontaneum20.824.8895700forward
CNT30655389Vitis viniferaRosa chinensis12.3627.6692.79416reverse complement
CNT30210175Vitis viniferaHelianthus annuus7.1964.3697.11242forward
CNT30627916Vitis viniferaDaucus carota23.9222.3198.51805forward
CNT3056795Vitis viniferaAmborella trichopoda8.5954.3294.46289forward
CNT30104639Vitis viniferaOryza rufipogon18.2455.9295.11614forward
CNT30577102Vitis viniferaOryza barthii6.6899.1292225forward

Expression of CNT30574574

Peptides detected in this lncRNA

>peptide 1 (55 aa)
MVGAANSDSARISFFGSTKGELAQKWDRGQDAVGRRRLTQVPPEPREMVAYYTAH*

>peptide 2 (73 aa)
MPPALSVPSLSEWSTPVCSFLISLVRVLSEPSRDVNGTYEVESVCLVFHLIRELRSEGLKISTAIVKLGHTLH*

>peptide 3 (42 aa)
MIKYMIIVLETPLFFSFKLGGLAFGQDVIYLFPWLEWNFGFL*

>peptide 4 (38 aa)
VKTTRDAACSFRSFSFGVEHSCLFLSNKLGTCSERAFA*

>peptide 5 (38 aa)
MKCNGMDGGGLPAPKSDDSLVPLSIGTSWHTTETTPAR*

>peptide 6 (33 aa)
MTEPLLYYSLPHPPSHLKGEVAEASLKAKECDL*

>peptide 7 (29 aa)
MNKGRPIDDRATLILLLTSPPFSLKGRSR*

Sequence

>CNT30574574
GTGAAGACGACGAGAGATGCCGCCTGCTCTTTCCGTTCCTTCTCTTTCGGAGTGGAGCACTCCTGTTTGTTCCTTTCTAATAAGCTTGGTACGTGTTCTG
AGCGAGCCTTCGCGTGACGTGAACGGTACCTATGAAGTGGAATCCGTCTGTCTTGTCTTCCACCTCATAAGGGAGTTGCGTTCCGAGGGACTCAAAATCT
CCACTGCTATTGTCAAGCTTGGACATACTTTACACTGACCCAATTGAGACCGTGGCCACACCTTGATAAAACAGTGATGATGTGGTCAACCCTGGATACG
TGGCTCTTCGATGGGGGAAGGACCACGCTAGTCGTCTGAGTGTGTGGTGTGTAGTGGGTGCGTCTTAGTGTCTTCTTACTACGAGAAAGAAATGATAAAA
TATATGATTATCGTTCTCGAAACTCCACTCTTTTTCTCTTTCAAACTAGGAGGATTGGCATTTGGCCAAGATGTGATCTATCTCTTTCCTTGGTTGGAGT
GGAACTTTGGTTTTCTTTAGCGAGGAACCGTTTCACTCGGCGGACAGTCGAATGATCAAAGCGAAATGCTTTAGGGTGGTCGAAGATCAGGGTGGTCTAC
GATCAGAGACAACCCGCTCTTGGACTTAAGACTATGCGCGTCGCGTGCTCGATCTAGCAATCTTGGACAATTGTTTTGATGAACTGTCACGAAACTCAAA
AATAAAGAAGAGAAAGAACTGGGAGTTGGCGCCTACATAACTGGTTGCTTGCTTACCAAGCCATCCTGGCAAGCTCCTCCAGTTTGATTCTTATTCTTGA
CTTGACTTATTATTATAAAAACTACTCACTAAAAAAATGAAAGACGATCTATTATCTACCCAAGAAGATAGAGAGTCCCACATACGATAAAAGGTCACAA
ATAGAGTTGAACCAAGTAACATTGCAAAGGCATAATGATAGTAGGGTCGGGATATCCCCGCCCTCCGAACCGGACGTGAAGGTCTCCCCTCATCCGGCTC
TCTGCAGGGGAATCTCCACTCACTGCTTCCCCTAATATCCTCCCTTTACCACATCATGGGGGTTTACAGGAGATCCCAGAGGCTCGCTCGGAAAGGCCTG
ATCTACGACCACTTCTGATCAAAGATCAGCCTGATCTACGACCACTTCTGATCAAAGATCAGCCTGATCTACGACCACCCTTTGACTCAACTCTACTCTA
GTAGTCACTAGACTCACTATAGTAGTCCGTCCGGCTGCTCTTGCTGAAATCATTACTCTTCATTCTCCCGTGCTCTAGCAATTGCGCTCCCTAGACCACT
ACCATGTAGTTAGGTAGGGACAATCAATCCGTAGTGACGGGAATCTAGGAATGAATGGGGATCCCTATCAATATAAAAATGAAGAATATATAATTAGACT
TTTCTCCCTTTCTCTCACTCAATAGATGTATCTGGTCTGATACGGTACAGTACAATACGAGACGATGAAATGCAATGGGATGGATGGTGGAGGGCTGCCT
GCGCCCAAAAGCGATGATTCACTTGTCCCCTTGTCCATAGGGACCTCGTGGCATACAACCGAAACGACTCCCGCTAGATAGCCGCCCCTTTCTCTCTTTT
TACAGCCTCGTGGACGGACGAAAGAAGGGAAGTTACAGAACGGGGCAGTGAAGGCTCGCGAAGTAGACAGCAAGCAACAGCTTCTCAGCCCCCTAACCTT
TCTATGTTATTAGTAAAGCGCTAGCGCGCCCCTTTCTCTAATAATAAGGGCGTTAAGCTGAAGCTGGCTGCTCTGCTATACTTTACTATACTAGTTGTAG
GGCGCTAGCGCTTTTTTTATAACAATGAGAGTCAAGGGGACTCTATCATGATCTTACGAATCTAAAGATCTCAAAATGGAAGAACGAGCTCTTTTGCTCG
CCCCTATCTCTAAAGGGGCGTAAGCACTTCACTCGCTAGGGGATGGGATTCATTCACTTGCATTCCTGCTAGCACTACAAAAAGCTCCGGTCTTAACGCC
CCTACTACTGCTGTGCAGCCTTTCCTCGGGTTCGTAGAGTCGGGTTTCCCGTTTACCCACAACGGAGGAGCCGCCCCCACCAGGCAGGCGGCCACGGGTC
ATAACGCACTCTTCGCACAACAAATCCACTTTGAAGTTGACTTATTCGCTCGGCCAATCGTCGGAATGTGTACGAGATACCATAAGGGCCCAATATCTCA
ATAGCACCTTTGTCTAAAGCTTCGAATGAGACTTCATATCCGAAACGCAGGAACGATCTGACTAGAAAGTCATTAAAAACTTGATCGAAGAACCAGCGTT
TATTGAAGAAGCTATAGAGTCGATTACAAAAAGTACTAGTTTGAAAGGCTCGTTGGAATTGATCCGCTACGGGATTTACATTATACGCAACAGAAGCACC
TGAAGTACTAAACGGAATAGGTATTAGTTTGGTAATGGTTGGAGCAGCAAACTCGGATTCGGCAAGAATCTCATTTTTTGGTAGTACGAAGGGGGAATTG
GCCCAAAAATGGGATAGGGGTCAAGACGCAGTCGGGCGCCGGCGGCTGACTCAAGTGCCCCCCGAACCGCGCGAAATGGTCGCCTATTACACGGCTCACT
AACTCTGCCTGGGGTGGGGGTACCTATTTTTTCGTCGGCGGTCCGGCGCACCCCTACTCACTTAAAGGATGCTGCTTAATTACGAAGGAAATTCTTTCTG
AATCTAGGGAGTTCCCTTTCGAAAAGCGCATCGAGCCAGGAGTGGACATCATCATCATCTGAAGACAAATCCAGATCCTGTTTCATCATTAGCTTAGCTA
AAGTGGAATAGTATGACTGGCTTTCCGGAAAATGAGACGAAACCCGCTTTATCGATATGATAAACATGCGCTAAAAAATACCTCCTAAACCCCCCCTGCC
AAGTGATCGAGTTTAGTCTTAATTTGCTGTAGAAGTTGCTCCCGCTCCGGACTTACTTCAAGGAAAGATAGGATTGGGCAATTCCGCCGGTTCTGGAGCT
TACCTTATTATTATTCAAAGGGGAAGGTTGCTCGTAGATCAGGCTGATTGTAAATCCGCTTTTTCTCCGAGAGGGCGCTTGCTTAACGCCCTTTTGCTGG
ATTGTTGGTCCGCAGCCCCGCCCTATAGAATGAATAAGGGGAGGCCTATCGATGACCGAGCCACTCTTATACTACTCCTTACCTCACCCCCCTTCTCACT
TAAAGGGCGAAGTCGCTGAAGCGAGTCTAAAGGCCAAAGAGTGTGATCTTTGAACGCTACTACGCATCCTTATGAAGACTATAGTGTAAGGTAGGTTTGG
GTATAGCAGGACTTGAACCTGCGACCATTAGGTTAAAAGCCCAATGCTCTACCAACTGAGCTATAC