Detailed information on CNT30574518


BLAST search results

BLAST vs Swiss-Prot:
sp|A5AEM3|THS4_VITVI, E-value = 0.0

BLAST vs NONCODE:
NONVVIT001224, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3074040Vitis viniferaBrassica juncea6.6824.8983.64110forward

Expression of CNT30574518

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MINIVQVSVKKFILVQYKSLFRSYHRAEMH*

>peptide 2 (76 aa)
MVRPGPKPNKTPQSNPSPVVVFCSFNDFFLISSIINKTQALDMFPYSLRTCLVALSFCLSKLNFASTASRIAGPPG*

>peptide 3 (50 aa)
MSTQDVKIILTDAVELLLELGHVLALSDPKIVIGEIRLVQTVVRGSCANG*

>peptide 4 (31 aa)
MSCCFKFLFIQTQFCFNCIKNSRATWMSNPK*

>peptide 5 (32 aa)
ENFLSFYFLLITYTRINNDFNLRSPRKSSNNS*

>peptide 6 (59 aa)
MITAADPSPKRAWPTKESKAVSEGPRNVTTVISEHTTRTRAPALFSARSLAVRRIVPPA*

Sequence

>CNT30574518
TGAAAACTTTCTTTCATTTTACTTCCTTTTGATAACATACACAAGAATAAACAATGATTTTAATTTAAGGTCTCCAAGGAAATCCTCCAACAATTCATAG
CTAACAATACATTAATTTAAGTTGCGATAACTTCGTTATTGTATATCTTTTTCTACCTTTATTTGATTAATAGCACATGGCTGAACAATCATATTTTCTA
CCTTTTCACTCAATTGGAATCCCTAGGAATACTGTGGAGGACAACAGTCTCGATGGTTAGGCCTGGTCCAAAGCCAAACAAGACGCCCCAATCCAATCCT
TCACCTGTTGTTGTTTTTTGTTCCTTCAACGATTTCTTTCTCATCTCGTCCATAATAAACAAGACACAAGCACTTGACATGTTCCCATATTCACTTAGAA
CATGTCTTGTTGCTTTAAGTTTTTGTTTATCCAAACTCAATTTTGCTTCAACTGCATCAAGAATAGCCGGGCCACCTGGATGAGCAATCCAAAATAAGGA
ATTCCAATCGTTGATTCCAATTGGGTCAAAAGCCTGAGTCAAACATTTCTCTATATTTTCGGAGATCAAAGTTGGCACATTAGGCCATAAATGAAAGGTG
AGACCCACTTCACGTAAGTTGCCTGCAATAGCACCTGCTGAATTTGGAATAAATGTTTGTGCTGCTGAAACAAGCTGGAAGAGTGGTCGTTCAATCGAGA
TATCGGGATCTGATCCAATGATTACAGCTGCTGACCCATCACCAAAAAGGGCTTGGCCAACTAAAGAGTCTAAAGCAGTTTCTGAAGGCCCACGAAATGT
AACAACAGTGATCTCAGAGCACACTACAAGAACTCGTGCTCCTGCATTATTCTCTGCAAGATCCTTGGCAGTTCGAAGGATAGTTCCACCTGCATAGCAC
CCTTGATGGTACAACATCACTCTTCTGACAGATGGTTCGAGGCCTAAAAGATTAGCGAGTTTATAATCTGCACCAGGCATTTCTACACCTGAGGTGGTAC
AAAATACAAGGTGGGTGATCTTCGATTTAGGCTGACCCCACTCTTTAAGGGCCTTCAATGCTGCTTCCTTGCCAAGCTTGGGCACCTCAGCAGTGATAAT
CTCTTGGCGGATGTTAAGAGATGGAGCCATATAAGCACCAATGTTTGGGTGCTCCTCAAGCATTTCTTCGGTCAAATGAATGTAACGCTTCTTGATCATT
GATTTATCACCTGTATATAAATTAAACGGGAGTAATATGTGAGCTCAAGGCATTCATTGTTCAAGATGATCAACATCGTTCAAGTGAGTGTAAAAAAATT
CATCTTAGTACAATATAAAAGCTTATTCCGCTCATACCATCGCGCAGAGATGCATTGAATTAATTTAAAATGAGTACACAGGATGTTAAAATTATACTTA
CAGATGCGGTTGAACTTCTTCTTGAGCTCGGTCATGTGCTCGCTCTTAGTGACCCGAAAATAGTAATCGGCGAAATCAGACTGGTACAGACAGTTGTCCG
GGGTAGCTGTGCCAATGGCTAGAACGGTGGCCGGACCCTTGGCACGCTGAGCATTTCTAATTTCCTCCACAGACGCCATTGATTAGTGTGTGATGACTAC
TCAAATTTGAAGAAGGAAAGAGAAATGAAATTTTAGGAGCTTGCTTG