Detailed information on CNT30574471


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674307Vitis viniferaSetaria viridis70.835.4390.05221forward
CNT30479086Vitis viniferaArabidopsis halleri35.5825.0696.4111forward
CNT30104589Vitis viniferaOryza rufipogon42.9530.7395.52134forward

Expression of CNT30574471

Peptides detected in this lncRNA

>peptide 1 (29 aa)
PPLHFHLGPGQVSGGTLSGSFPPKKTNCT*

>peptide 2 (33 aa)
MTNRVRHLATSARKRNVVLVEAFFPLLVKGARDV

>peptide 3 (72 aa)
PTTSLSLRPGPSQWGDPVGLLPPQKNKLYVRVSLHTARIILRCPERHPFLVCWVGSRARKRAPAATAGNYDQ*

Sequence

>CNT30574471
GCCCACCACTTCACTTTCACTTAGGCCCGGGCCAAGTCAGTGGGGGGACCCTGTCGGGCTCCTTCCCCCCCAAAAAAACAAACTGTACGTGAGAGTTTCC
CTTCATACGGCTCGAATCATTCTCAGATGCCCCGAGAGGCATCCTTTCCTTGTTTGTTGGGTTGGTTCACGCGCGCGCAAACGAGCACCGGCCGCAACAG
CAGGGAACTATGACCAATAGAGTAAGACACTTAGCTACATCCGCACGCAAAAGGAATGTGGTTCTGGTTGAGGCTTTCTTTCCCTTATTAGTAAAGGGGG
CGCGGGACGTTC