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Detailed information on CNT30574446


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LU44|SF1_ARATH, E-value = 5e-41

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30549115Vitis viniferaIpomoea triloba32.8148.281.63294forward
CNT3042609Vitis viniferaPrunus dulcis18.0837.6785.8162forward

Expression of CNT30574446

Peptides detected in this lncRNA

>peptide 1 (62 aa)
EALVEPSSKAHFPCSAIDLPLDKVQEEVEEEQHHNKSNHMKMLNMQVEDLVVLQIRSSHKHW*

>peptide 2 (39 aa)
RHWWSRAPRRISHVLRLICHWIRYRKRWRRSNTIIRVTI*

>peptide 3 (38 aa)
MYKFVSSYSLMGLAPFAPKPACAVPPALLDQGGLLPEPL

>peptide 4 (30 aa)
MDRHCRRGRTWRDSRLRRLTCNPHSNCSSL*

Sequence

>CNT30574446
GAGGCACTGGTGGAGCCGAGCTCCAAGGCGCATTTCCCATGTTCTGCGATTGATCTGCCATTGGATAAGGTACAGGAAGAGGTGGAGGAGGAGCAACACC
ATAATAAGAGTAACCATATGAAGATGTTGAATATGCAGGTTGAGGATTTGGTGGTATTGCAGATAAGGAGCTCCCATAAACACTGGTAGGTACAGATTGA
ACAGAAGAACCACTTTCAGACTGCACTCCTGGAGGGAAATTCTGTTGTGCTTCACTAGACACCACAGTCTGAGCTGGGGCACCAGCAGAAACTGACTGTG
TAGGAGGAGGAGGAGGAGGATATTGCACACCATAAGGAGGCACAGGTTGACCTGGGACTGGAGTGTATAAGCTTGACCCAGGGGGAGGAGGAGGGTAAGG
GGCATAAGGAGGAGGAACCGGTCCCCATGGAACTGGAGCACCAGGGGCATAGCTCGGTGGTGGAGTATTCCCAAGGGGACCACCTGCGGTAAATTGCTGG
GATGGATAGGCATTGCAGGAGGGGGAGGACCTGGAGGGACAGCAGGCTGAGGAGGCTTACCTGCAACCCTCACAGCAATTGTTCTTCCCTCTAAACGATA
ACCATTCATACTGGCAATTGCACTATTGGCTTGTTGAACATCAGAATACTTGACAAAACCATACCCTTTGCTCAATCCAGTAACCCTATCCTTAATAACC
TTAGCCATCACAATATCACCAAAGGGTGAAAACAACCTAATCAAAGCATCGTCTTCAAGAGTAGGTGGCAAATACCCAATGTACAAGTTTGTATCATCAT
ATTCCTTAATGGGTTTGGCTCCATTTGCCCCTAAGCCAGCTTGTGCTGTACCACCAGCATTGTTAGACCAAGGAGGATTGCTACCAGAACCACTTG