Detailed information on CNT30574365


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695362Vitis viniferaOryza sativa10.1721.9898.3360reverse complement
CNT30191267Vitis viniferaSecale cereale13.5623.539580forward
CNT30467175Vitis viniferaSaccharum spontaneum10.1725.6410060forward
CNT3067939Vitis viniferaLeersia perrieri11.1922.9298.4866reverse complement
CNT30154619Vitis viniferaPrunus persica13.920.296.3482forward

Expression of CNT30574365

Peptides detected in this lncRNA

>peptide 1 (54 aa)
MEMDCSFSILLETLFYEMPMEFWLLGFRVLLMLRMITLRQSFSFVYSNMLSKGL*

>peptide 2 (40 aa)
VLRLWSPSPINIKEGASGSYIQSWGFVIGLLSQRASRHES*

Sequence

>CNT30574365
GGTTTTGAGACTCTGGAGCCCTAGCCCTATAAATATCAAAGAAGGGGCGTCTGGTAGCTATATTCAGAGCTGGGGATTTGTAATCGGCCTGCTGAGTCAA
AGAGCGAGTCGCCATGAGAGCTAAGTGGAAGAAGAAGCGCATGAGGAGGCTGAAGAGGAAGCGCCGAAAGATGAGGCAGAGATCAAAGTAGAGGTTTACA
AGGACAAGAAGATAGACCTTCCCTGATATGCCTTTTTGTCTTCATAACCTGCATTCGTGACCATGCGGGCTTGTGAGGATCGGAAGATTGATGGAGATGG
ATTGTTCTTTTTCTATCTTATTGGAAACCTTGTTCTATGAGATGCCAATGGAGTTTTGGCTTTTAGGCTTTAGAGTATTATTGATGCTTCGGATGATAAC
GTTGAGACAGTCATTTAGTTTTGTTTATTCTAATATGCTTTCAAAAGGTTTATGAAACTTGAAGAAGATTGAACTCTTGGATGGATCATTAAAAATGAAT
CTCTGATCTGAACATCTTAGAAATATCTTTTATGTGCTGCAAATGGTGCAAGGATTTTTCATTAAATCTTAACAAGGGGGTGGATGATTG