Detailed information on CNT30574179


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONSTUT001430, E-value = 5e-30

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30366505Vitis viniferaSorghum bicolor79.7541.1480260forward
CNT30354661Vitis viniferaLactuca sativa88.6551.9882.01289forward
CNT3023560Vitis viniferaPopulus trichocarpa55.5238.0380.66181forward

Expression of CNT30574179

Peptides detected in this lncRNA

>peptide 1 (57 aa)
MLDCNQERSGYMPERWGCMMERLDYKKVRLGYRMVRSGYRKVRLGYRKVRWGCKQEK*

>peptide 2 (30 aa)
SDCKGLMEIVLDCWENMPVMGCILLRKDYN*

Sequence

>CNT30574179
GTCGGACTGTAAGGGCTTGATGGAGATAGTCTTGGACTGCTGGGAGAATATGCCAGTGATGGGCTGTATTTTGCTGAGGAAGGATTATAACTAGGTGATG
TAGGGCTGTAGCTTGGAGAGGTGGGACTGTAGCTAGGAGATGTTGGACTGTAACCAGGAGAGGTCGGGCTATATGCCGGAGAGGTGGGGCTGTATGATGG
AGAGGTTGGACTATAAGAAGGTGAGGTTGGGCTATAGGATGGTGAGGTCGGGCTATAGGAAGGTGAGGTTGGGCTATAGGAAGGTGAGGTGGGGCTGTAA
GCAGGAGAAGTAGGGCTGTAACCAGG