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Detailed information on CNT3057379


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673843Amborella trichopodaSetaria viridis53.0532.5383.78148forward
CNT30522713Amborella trichopodaSetaria italica38.3528.8485.98107forward
CNT30381383Amborella trichopodaManihot esculenta35.135.5885.7198forward
CNT30168132Amborella trichopodaPistacia vera38.3526.0382.24107forward
CNT30562824Amborella trichopodaActinidia chinensis38.7119.4289.81108forward
CNT30261872Amborella trichopodaBrassica rapa55.217.486.36154forward
CNT30681999Amborella trichopodaTriticum urartu28.6725.1688.7580forward
CNT30722533Amborella trichopodaTriticum spelta53.0525.9683.11148forward
CNT30361420Amborella trichopodaSorghum bicolor40.1426.3589.29112forward
CNT30569889Amborella trichopodaVitis vinifera36.221.2287.13101forward
CNT30328090Amborella trichopodaAsparagus officinalis53.7644.3886.67150forward
CNT3099786Amborella trichopodaOryza rufipogon29.7518.0886.7583forward
CNT30116105Amborella trichopodaOryza nivara34.7713.1490.7297forward

Expression of CNT3057379

Peptides detected in this lncRNA

>peptide 1 (32 aa)
YRTHSTSHYWGSTPQSKRSSYFAHLSFAHQLL*

>peptide 2 (91 aa)
IAHTRLHIIGDPLHKVRGVLILHIYHLLINFFSRHFPSKHGRGAKPTMKKWRRGKGMRFTASFRRSELSWPGKRRQQVTPDMVAEMRWFRSP

Sequence

>CNT3057379
ATATCGCACACACTCGACTTCACATTATTGGGGATCCACTCCACAAAGTAAGAGGAGTTCTTATTTTGCACATTTATCATTTGCTCATCAACTTCTTTAG
TCGACATTTTCCCTCTAAACATGGCAGAGGGGCAAAACCGACCATGAAGAAGTGGAGGCGGGGGAAGGGGATGAGGTTTACGGCGAGCTTTCGGAGGTCG
GAGTTGAGCTGGCCAGGGAAGCGGAGGCAGCAGGTCACACCCGACATGGTGGCCGAGATGAGGTGGTTCAGATCACCAA