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Detailed information on CNT3057373


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675224Amborella trichopodaSetaria viridis46.2430.3282.54252forward
CNT30641079Amborella trichopodaNymphaea colorata43.8532.1780.33239forward
CNT30402401Amborella trichopodaBeta vulgaris27.3412.5482.55149forward
CNT30629386Amborella trichopodaVigna unguiculata15.0531.7885.3782forward
CNT30196370Amborella trichopodaPisum sativum35.620.3685.05194forward
CNT30223001Amborella trichopodaHordeum vulgare13.0325.5494.3771forward
CNT30390564Amborella trichopodaTriticum turgidum13.0323.3694.3771forward
CNT30511058Amborella trichopodaSolanum lycopersicum15.635.5687.0685forward
CNT30442409Amborella trichopodaAegilops tauschii42.5734.6381.47232forward
CNT30253208Amborella trichopodaAvena sativa58.3526.4680.5318forward
CNT305432Amborella trichopodaZea mays48.9972.7584.27267forward
CNT30722476Amborella trichopodaTriticum spelta42.5734.6881.03232forward
CNT30341625Amborella trichopodaEragrostis tef44.2224.7281.74241forward
CNT30364844Amborella trichopodaSorghum bicolor44.2255.2880.5241forward
CNT30369350Amborella trichopodaOryza glumipatula42.7533.5382.4233forward
CNT3033661Amborella trichopodaTheobroma cacao38.1710083.65208forward
CNT30330123Amborella trichopodaDioscorea rotundata38.920.8383.49212forward
CNT30575061Amborella trichopodaOryza barthii42.7525.6382.4233forward
CNT30333708Amborella trichopodaCynara cardunculus41.6528.0283.26227forward

Expression of CNT3057373

Peptides detected in this lncRNA

>peptide 1 (31 aa)
TGTKELYLLYKEERLKRCMIQVTIYASKGAL*

>peptide 2 (68 aa)
MAEAVRYRPCLGSAAHIMFLESHICWVSSGTVRARYCWEPREVGVELAREAEAAGHTRHGGRDEVVQIT

Sequence

>CNT3057373
GTACAGGAACAAAGGAACTATACCTCTTATATAAAGAAGAAAGATTAAAAAGGTGCATGATACAGGTAACAATATATGCTTCAAAAGGCGCATTATAAAC
AGACAACAAGGAATATGGGTGATAAAAGATAGGACATACCAGTGCAAGAAAGCCTTCCTCCTGAACATGGCAGTGAACTGCTCACTCACCCTCCTAAACA
TCTCCTGAATAGAGGGATATCGCACACACTCGACTTCACATTATTGGGGATCCACTCCACAAAGTAAGAGGAGTTCTTATTTTGCACATTTATCATTTGC
TCATCAACTTCTTTAGTCGACATTTTCCCTCTAAACATGGCAGAGGCAGTGAGATATCGGCCATGCCTTGGGTCCGCAGCACACATCATGTTTTTGGAAT
CCCACATTTGTTGGGTGAGTTCAGGGACAGTTAGGGCACGGTATTGTTGGGAGCCACGAGAGGTCGGAGTTGAGCTGGCCAGGGAAGCGGAGGCAGCAGG
TCACACCCGACATGGTGGCCGAGATGAGGTGGTTCAGATCACCAA