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Detailed information on CNT30573704


BLAST search results

BLAST vs Swiss-Prot:
sp|O22077|RBS_FAGCR, E-value = 3e-47

BLAST vs NONCODE:
NONVVIT001317, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30512567Vitis viniferaJuglans regia10.8820.3383.5385forward
CNT30377290Vitis viniferaArabidopsis thaliana23.4320.6180.87183forward
CNT30279731Vitis viniferaChenopodium quinoa25.6115.2882.5200forward
CNT30727202Vitis viniferaCorchorus capsularis23.8210.7583.87186forward
CNT30712618Vitis viniferaGlycine max25.7434.4281.59201forward
CNT3091655Vitis viniferaSolanum tuberosum23.6930.5881.62185forward
CNT30545373Vitis viniferaBrassica napus2126.8981.71164forward
CNT30312471Vitis viniferaCamelina sativa23.4324.4382.51183forward
CNT3062250Vitis viniferaArabidopsis lyrata23.4317.281.97183forward
CNT3075084Vitis viniferaBrassica juncea23.320.9781.32182forward
CNT30261239Vitis viniferaBrassica rapa22.9222.6681.56179forward
CNT30613101Vitis viniferaArabis alpina24.3330.6580.53190forward
CNT30479552Vitis viniferaArabidopsis halleri23.331.7181.32182forward
CNT30620550Vitis viniferaCajanus cajan23.315.1981.32182forward
CNT3039544Vitis viniferaMarchantia polymorpha7.9423.3190.3262forward

Expression of CNT30573704

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MMIHHILIQYSIALLHRRLRISKEKTKNRHKK*

>peptide 2 (54 aa)
MKAMHCTWRLLSNPMIRMWASGYAVLASCTSLITWAESVHPNMGSFHMVQYLPS*

>peptide 3 (31 aa)
PPTTQSLYHLISYIDRNDQHLQKYILSKHEQ*

Sequence

>CNT30573704
ACCTCCCACCACACAATCCTTGTACCACCTTATCTCATATATAGATAGGAATGATCAACACTTACAGAAGTATATATTAAGCAAGCATGAACAGTAAGTA
AATATAAAGCTGAAAGCAAAGAGCATAGGTATTATTAAAAGTGGTGGCGTTTACATGGCCACCAACGATTAAAACATCCGACGATGATGATACACCATAT
CCTCATACAATATTCCATTGCATTACTCCATCGGAGACTTCGAATAAGCAAAGAAAAAACAAAAAACAGACACAAAAAATAAAATTCCACAAGGGTCCTA
AACATGAGAGTGAAAAAACATGGACATCAAATATTGCGGAAACAGGATCAGCTGGGCTTGTAGGCAATGAAAGCGATGCATTGCACTTGGCGGTTATTGT
CGAATCCGATGATTCGGATGTGGGCGTCAGGGTACGCGGTCCTGGCTTCTTGCACCTCCTTAATCACCTGGGCTGAGTCAGTGCACCCGAACATGGGCAG
CTTCCACATGGTCCAGTACCTTCCGTCGTAGTATCCTGGCGATCTGTTGTGCTCTCTGTGGGGGTATGAGAGAGTCTCGAACTTCATCAACCCTTCTGTA
GGCCAAACCTTCGACAAAGATTTGAGTCCGGTGAAGGGGGCCACCATGTTGGCCTGAGCCGGGGTAGCACGGTTGATTGTAGCCACGGTGGCGGAGGAGA
CCATGGAGGAAGCCATTTTCGCCTTTTGGGTTTTGCTAACACCACCACTGCCTTGTGAGTTATGGCTCCTGCTTACCCCAT