Detailed information on CNT30573685


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30670693Vitis viniferaSetaria viridis26.4144.5987.38103forward
CNT30639580Vitis viniferaNymphaea colorata22.5619.3885.2388forward
CNT30517189Vitis viniferaJuglans regia21.5421.5985.7184forward
CNT30702258Vitis viniferaQuercus lobata34.128.384.96133forward
CNT30376640Vitis viniferaArabidopsis thaliana31.5415.2887.8123forward
CNT30619260Vitis viniferaSesamum indicum31.2811.4684.43122forward
CNT3020603Vitis viniferaCitrullus lanatus32.828.2785.16128forward
CNT3072357Vitis viniferaQuercus suber34.112.9584.21133forward
CNT30380227Vitis viniferaManihot esculenta40.2637.6584.71157forward
CNT30709695Vitis viniferaGlycine max2023.3585.978forward
CNT30544223Vitis viniferaBrassica napus33.8530.1486.36132forward
CNT3076654Vitis viniferaBrassica juncea33.0827.6286.05129forward
CNT30261371Vitis viniferaBrassica rapa22.3120.8187.3687forward
CNT30612366Vitis viniferaArabis alpina4057.5683.33156forward
CNT30607325Vitis viniferaGossypium raimondii40.7712.3384.28159forward
CNT30651401Vitis viniferaRosa chinensis38.7256.3484.11151forward
CNT30680065Vitis viniferaTriticum urartu24.3625.0787.3795forward
CNT3026673Vitis viniferaPopulus trichocarpa37.4415.4585.62146forward
CNT30103811Vitis viniferaOryza rufipogon21.2816.2185.5483forward
CNT30578287Vitis viniferaOryza barthii24.117.8485.1194forward
CNT30723196Vitis viniferaLupinus angustifolius36.4117.8283.1142forward

Expression of CNT30573685

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MLGQHVHLFLILARCLLLPELKLGNHLVCKRA*

>peptide 2 (30 aa)
QTHDSATSHLLMLPKSVLKFAKKQNSKSDL*

Sequence

>CNT30573685
GACAGACACATGACTCAGCGACATCGCATTTATTAATGTTGCCAAAATCCGTCCTAAAATTTGCCAAAAAGCAAAACAGCAAATCTGATCTCTAAGAGGT
GATAACAGGCGGAATCATAATATCACACCAACAAAAACACAACAATCACCAGGCTAGTACCTGTAGTGAGTGGGCTTGTAAGGACCTTCCACAGGGACAC
TAATGTAAGCAGCTTGCTCGGGGCTAAGCTTGGTGAAGAGCTGCAACCTTCTCATCCAGATGCTTGGGCAGCACGTACACCTTTTTCTCATACTTGCCCG
TTGCCTTCTCCTTCCAGAGCTCAAGCTGGGCAATCACCTGGTTTGTAAACGAGCATGACATCACAAAGCTGGGATGCCCAGTTGCACATC