Detailed information on CNT30573629


BLAST search results

BLAST vs Swiss-Prot:
sp|A5AEM3|THS4_VITVI, E-value = 0.0

BLAST vs NONCODE:
NONVVIT001224, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30379505Vitis viniferaManihot esculenta11.933.2282.72191forward

Expression of CNT30573629

Peptides detected in this lncRNA

>peptide 1 (63 aa)
MGNLGFGLTPLFKSLQCRFLTKLGYLSSNNLLTYVKRWSHISTNVWVLLKHFFGQMTITLLDH*

>peptide 2 (49 aa)
MFGPPRLAGRVVVQSRDLDLIQQLQLQNHHQKGLGQLKSPKQFQKAHGM*

>peptide 3 (76 aa)
MVRPGPKPNKTPQSNPSPVVVFSSFNDFFLISSIINKTQALDMFPYSLRTCLVALSFCLSKLNFASTASRIAGPPG*

>peptide 4 (31 aa)
MSCCFKFLFIQTQFCFNCIKNSWATWMSNPK*

>peptide 5 (29 aa)
MKRMLKLDLQMRLNFFLSSVMCSLLVTRK*

>peptide 6 (69 aa)
MLAQGTSLIVQVSIWIHNYMYEKDVKIRLTNAVELLLELGHVLALSDPKIVISEIRLVQTVVRGSCANG*

>peptide 7 (82 aa)
MNVWAAETSWKSGRSIERFGSDPTITAAEPSPKRAWPTKESKAVSEGPRNVTTVISEHTTRTRAPALFSARSLAVRRTVPPA*

Sequence

>CNT30573629
TAGGCAAAACACAAATCCATTCTTTCATTTTATTTCCTTTTGATAACATACACTAGAATAAACAATGATTTTAATTTAAGGTCTCCAAGGAAATCCTCCA
ACAATTCATAGATAACAATACATTAATTTAAGTTGCGATAACTTCGTTATTGTATATCTTTTTCTACCTTTATTTGATTAATAGCACATGGCTGAACAAT
CATATTTTCTACCTTTTCACTCAATTGGAATCCCTAGGAATACTGCGGAGGACAACAGTCTCGATGGTTAGGCCTGGTCCAAAGCCAAACAAGACGCCCC
AATCCAATCCTTCACCTGTTGTTGTTTTTTCTTCCTTCAACGATTTCTTTCTCATCTCGTCCATAATAAACAAGACACAAGCACTTGACATGTTCCCATA
TTCACTTAGAACATGTCTTGTTGCTTTAAGTTTTTGTTTATCCAAACTCAATTTTGCTTCAACTGCATCAAGAATAGCTGGGCCACCTGGATGAGCAATC
CAAAATAAGGAATTCCAATCGCTGATTCCAATTGGGTCAAAAGCCTGAGTCAAACATTTCTCTATATTTTCGGAGATCAAAGTTGGCACATTAGGCCATA
AATGAAAGGTGAGACCCACTTCACGTAAGTTGCCTGCAATAGCACCTTGGGTATTGGGGATGAATGTTTGGGCCGCCGAGACTAGCTGGAAGAGTGGTCG
TTCAATCGAGAGATTTGGATCTGATCCAACAATTACAGCTGCAGAACCATCACCAAAAAGGGCTTGGCCAACTAAAGAGTCCAAAGCAGTTTCAGAAGGC
CCACGGAATGTAACAACGGTGATCTCAGAGCACACCACGAGAACCCGTGCTCCTGCATTATTCTCAGCAAGATCCTTAGCGGTTCGAAGGACAGTTCCAC
CTGCATAGCACCCTTGATGGTACAACATTACTCTTCTGACTGATGTTTCAAGGCCTAGGAGATTAGCGAGTTTATAGTCGGCACCGGGCATTTCTACACC
CGAAGTTGTACAAAATACAAGATGGGTAATCTTGGATTTGGGTTGACCCCACTCTTTAAGAGCCTTCAATGCCGCTTCCTTACCAAGCTTGGGTACCTCA
GCAGTAATAATCTCTTGACGTATGTTAAGAGATGGAGCCATATAAGCACCAATGTTTGGGTGCTCCTCAAGCATTTCTTCGGTCAAATGACTATAACGCT
TCTTGATCATTGATTTATCACCTGTATATAAATTATTAATAATACTAATATGTTAGCTCAAGGAACCAGTTTGATTGTTCAAGTGAGTATATGGATACAC
AATTATATGTATGAAAAGGATGTTAAAATTAGACTTACAAATGCGGTTGAACTTCTTCTTGAGCTCGGTCATGTGCTCGCTCTTAGTGACCCGAAAATAG
TAATCAGCGAAATCAGACTGGTACAGACAGTTGTCCGGGGTAGCTGTGCCAATGGCTAGAACGGTGGCCGGACCCTTGGCACGCTGAGCATTTCTAATTT
CCTCCACAGACGCCATTGATAGTAGGATGACTGCTGAAATCGAAGCTTAAAAGTTGAAGAAGGAAAGAGAAGTGAATGTTTCGGAGCACAGAGTGCTTGG
AGCTG