Detailed information on CNT30573615


BLAST search results

BLAST vs Swiss-Prot:
sp|A5AEM3|THS4_VITVI, E-value = 0.0

BLAST vs NONCODE:
NONVVIT001224, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30378024Vitis viniferaArabidopsis thaliana8.6924.1480.45133forward
CNT30145942Vitis viniferaMedicago truncatula10.1925.7984.62156forward

Expression of CNT30573615

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MKRMLKLDLQMRLNFFLSSVMCSLLVTRK*

>peptide 2 (76 aa)
MVKPGPKPNKTPQSNPSPVVVFPSLSDFFLISSKINKTHALDMFPYSLRICLVALSFCLSKVSFASTASRIAGPPG*

>peptide 3 (82 aa)
MNVWAAETSWKSGRSIERSGSDPTITVAEPSPKRAWPTKESKAVSEGPRNVTTVISEHTTRTRAPALFSARSLAVRRTVPPA*

>peptide 4 (63 aa)
MGNLGFGLTPLFKSLQCRFLTKLGYLSSNNLLTYVKRWSHISTNVWVLLKHFFGQMTITLLDH*

>peptide 5 (64 aa)
MINIVQVSIWIHNYMYEKDVKIRLTNAVELLLELGHVLALSDPKIVISEIRLVQTVVRGSCANG*

>peptide 6 (46 aa)
MVFPIISLSLNPFERYVAQRSQWSSLAQSQTKHPNPILHLWLSFLP*

>peptide 7 (49 aa)
MFGPPRLAGRVVVQSRDLDLIQQLQLQNHHQKGLGQLKSPKQFQKAHGM*

Sequence

>CNT30573615
GTCCTCCAACAACGATAAATAACAAATAATAAATTCTGAGTAAAGATGATTTCATGGTGATATATCTTTACTACCAATATTTGATTAATAGAACATGGCT
CGTGAATGGTTTTTCCTATCATTTCACTTAGTTTGAATCCATTTGAACGCTATGTAGCACAACGGTCTCAATGGTCAAGCCTGGCCCAAAGCCAAACAAA
ACACCCCAATCCAATCCTTCACCTGTGGTTGTCTTTCCTTCCTTGAGCGATTTCTTTCTCATCTCGTCCAAAATAAACAAGACACATGCACTTGACATGT
TCCCATATTCACTTAGAATATGTCTTGTTGCTTTGAGTTTCTGTTTATCTAAAGTGAGTTTTGCTTCAACCGCATCAAGAATAGCTGGGCCACCGGGATG
AGCAATCCAGAATAAGGAATTCCAGTCACTAATACCAATTGGGTCAAAAGCCTTAGTCAAACACTTCTCTATGTTTTCAGATATCAAACTAGGCACATTA
GGCCACAATTGAAAGGTGAGACCCACTTCACGTAAGTTGCCTGCAATAGCACCTTGGGTATTGGGGATGAATGTTTGGGCCGCCGAGACTAGCTGGAAGA
GTGGTCGTTCAATCGAGAGATCTGGATCTGATCCAACAATTACAGTTGCAGAACCATCACCAAAAAGGGCTTGGCCAACTAAAGAGTCCAAAGCAGTTTC
AGAAGGCCCACGGAATGTAACAACGGTGATCTCAGAGCACACCACGAGAACCCGTGCTCCTGCATTATTCTCAGCAAGATCCTTAGCGGTTCGAAGGACA
GTTCCACCTGCATAGCACCCTTGATGGTACAACATTACTCTTCTGACTGATGTTTCAAGGCCTAGGAGATTAGCGAGTTTATAGTCAGCACCGGGCATTT
CTACACCTGAAGTTGTACAAAATACAAGATGGGTAATCTTGGATTTGGGTTGACCCCACTCTTTAAGAGCCTTCAATGCCGCTTCCTTACCAAGCTTGGG
TACCTCAGCAGTAATAATCTCTTGACGTATGTTAAGAGATGGAGCCATATAAGCACCAATGTTTGGGTGCTCCTCAAGCATTTCTTCGGTCAAATGACTA
TAACGCTTCTTGATCATTGATTTATCACCTGTATATAAATTATTAATAATACTAATATGTTAGCTCAAGGAACCAGTTTGATTGTTCAAGATGATCAACA
TTGTTCAAGTGAGTATATGGATACACAATTATATGTATGAAAAGGATGTTAAAATTAGACTTACAAATGCGGTTGAACTTCTTCTTGAGCTCGGTCATGT
GCTCGCTCTTAGTGACCCGAAAATAGTAATCAGCGAAATCAGACTGGTACAGACAGTTGTCCGGGGTAGCTGTGCCAATGGCTAGAACGGTGGCCGGACC
CTTGGCACGCTGAGCATTTCTAATTTCCTCCACAGACGCCATTGATAGTAGGATGACTGCTGAAATCGAAGCTTAAAAGTTGAAGAAGGAAAGAGAAGTG
AATGTTTCGGAGCACAGAGTGCTTGGAGCTG