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Detailed information on CNT3057356


BLAST search results

BLAST vs Swiss-Prot:
sp|Q70Y04|PSAB_AMBTC, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30526965Amborella trichopodaEucalyptus grandis5.2859.0785.04127reverse complement
CNT30202037Amborella trichopodaPisum sativum63.7247.1185.061533forward
CNT30289362Amborella trichopodaTriticum aestivum27.5658.8887.03663forward
CNT30219816Amborella trichopodaHordeum vulgare50.3360.7685.711211forward
CNT3059930Amborella trichopodaArabidopsis lyrata11.683.7888.53279forward
CNT30682212Amborella trichopodaTriticum urartu83.3360.8386.132005forward
CNT30368556Amborella trichopodaSorghum bicolor18.589.5487.42445forward
CNT30152144Amborella trichopodaPrunus persica7.9890.1487.5192forward
CNT30430934Amborella trichopodaPapaver somniferum77.5628.5687.731866forward
CNT30147977Amborella trichopodaBrachypodium distachyon24.5248.1687.12590forward
CNT30585620Amborella trichopodaEchinochloa crusgalli83.3339.0886.732005forward
CNT30496729Amborella trichopodaDigitaria exilis41.3597.8486.93995forward

Expression of CNT3057356

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MIFLFQFLPLPLPLNQAFPCHMKFLLFPMIQVGS*

>peptide 2 (32 aa)
MFWIVISNEEYSSMSKGPCHDEACYEYITQLE*

>peptide 3 (31 aa)
MERATSLSLNRIKLAKGVRSRAYTRVSINSC*

>peptide 4 (35 aa)
MSLKTYMCTITWWGLQFSMNFPFVTQRWSFTCFFF*

>peptide 5 (38 aa)
MNGIIDCVIKTFMCTSQSIPLEEYVLLKDLLYYDRSRS*

>peptide 6 (39 aa)
MNPVAQTRCPNRNIHAQIDKLLVPKGLYRLISCEEFNRR*

>peptide 7 (92 aa)
MEFYLFLFLRIDESNDISIPISASSSPSESGFSLPYEVPIIPNDTGRILDVEILRRWISPSTSKQVKLLLIQEDAASIFFKKLTKFARSRDN*

Sequence

>CNT3057356
CAACAAACATGCATGAAGCATCTCGAGGAGTACGTGTCCGGATAGCCCAAAGTCTCAATAGTTAGCTCTAGGTCTTCTGGTCAAAAAACAATGTCGTTGA
AGACGTATATGTGTACTATTACGTGGTGGGGATTGCAATTTTCCATGAATTTTCCATTTGTCACTCAACGATGGAGTTTTACTTGTTTCTTTTTTTAAGG
ATCGACGAATCAAATGATATTTCTATTCCAATTTCTGCCTCTTCCTCTCCCTCTGAATCAGGCTTTTCCTTGCCATATGAAGTTCCTATTATTCCCAATG
ATACAGGTCGGATCCTAGATGTAGAAATATTAAGAAGGTGGATCTCCCCTTCTACATCGAAACAAGTGAAATTGTTGCTGATACAGGAAGATGCCGCCTC
TATTTTTTTCAAAAAATTAACCAAATTTGCCCGAAGTAGAGACAATTAAGAAAGCTGCATAAGTAAATATATAACCTATAGAAAAGTGGGCTAAGCCAAC
CAGTCTTGCTTGAACAATGGAAAGAGCCACGAGTTTATCCCTCAATCGAATCAAATTAGCCAAAGGTGTGCGTTCACGAGCCTATACTAGAGTTTCAATT
AATTCCTGCTAATATCCTAGCCAGGATATTAAAAACATGAATCCAGTAGCCCAAACCAGATGCCCAAATAGGAACATCCACGCTCAGATAGATAAACTAC
TTGTACCGAAAGGATTATATAGATTGATAAGTTGTGAAGAGTTTAACCGTAGATAACCTCTTAACCATCCCATCAAATAAGTGGAAGATTCATTAAATTG
TGAAGGATTACCCTGCTATAATGTGATATGCTTTCAATGCCAATAAAAAGTAACCCATCCAATGGTATTTAACATCCAGAAAACCGTCAAATAAAATACA
TCCCAAGCCGAAATATCACAAGTACCGCCTCGTCCTAGACCATAGCAAGGGAAACTATAACCTAAATCTTTCTTATCTGGCATGAACTTGGAACCACGTG
CATCTAAAGCACCTTTTACTAAGATCAATGTAGTTGTATGCAAACCTAGAGCAATAGCATGATGAACCAAGAAGTCTCTAGGACCTATTGTTAGAAAATA
GTGAATTACCATTCTCATTAATAGCATTCAACCAGCCAGGTAACCATACTCTTCGACCAGCATTGAATGCTGGGCCGTTCATTGAAGATAAGAGTACATC
AAATCCATATGAAGTCTTACCTTGAGTGGATTGTATCCATTGGGCAAATATAGGTTCAATCAAGATTTGTTTTTCTGGAGTACCAAAAGCAAGCATGACG
TCATTATGATCATAGAGTCCCAAAGTATGGAAACCCAAGAACAAGCTAGCCCAACTTAAATGAGATTTTATAGCTTCTTTATGGTCTAACATTCTTGCCA
ATACATTATCCTCGTTATGTTCTGGATTGTAATCTCTAATGAAGAATATAGCTCCATGAGCAAAGGCCCCTGTCATGATGAAGCTTGCTATGAGTATATA
ACGCAGCTTGAGTAGTAAAGTCTTGTGCTATGAATGCATAAGGAGGTAAAGTATACATGTGTTGAGCTACCAAGGAAGTAATAACCCCCAAAGAGGCTAG
AGCAAGACCTAATTGAAAATGAATGGAATTATTGATTGCGTCATAAAGACCTTTATGTGCACGTCCCAATCGATCCCCCTGGAGGAGTATGTGCTTCTAA
AAGATCTTTTATATTATGACCGATCTCGAAGTTAGTTCTATACATATGATCAGTAATGAGAAAAACAAATCCAATAGCTAAATGATGATGAGAAATATTG
GTCAGCCATAAGCTTCGAGTTTGAGGATGGAATCCCCTGAGAATGGTTAGAATGGCAGTTCCTGCTCCTTGGGAGGTACCAAATAAATGACCACTGGAAT
CAGGGTTTTGGGAATAAAGATTCCACTGCCCTGTAAAAAGTGACCCCAAGCCTTGAGGAGATGGTAATACATCTAGGAAATTATTCCATTTAACGTATTC
CACTTGGATCCAGAAATAGCGACATGAACTAAATGTTCTATCCAAGCCAAGGAACTTACTCCGAACAGTCCTGACAAATGACGATTAAGACGAGAGTCAA
CATTTTCGCACCACGAAACGCTTGGCTGCCATTTGGGTTGTAGATGTAACCAACCCGCTATTAAAGATATCGCAGAAAGAAATAATAGAAAAAGAGCTCC
AGTATAAAGATCTTCATTGGTGCCCAAGTCGATTGTATACCACCACTGATAGAGACCGGAATAAGCAATATTCACTTGACCGAGAGCACCCCCTCAAGTA
AAGGCTTCTATAGCTGGTTGACCAAAATGAGGATCCCAAATTGCATGAGCAATAGGTCTTACATGTAAAGGGTCATGTACCCATGACTAAAAATTTCCTT
GACAAG