Detailed information on CNT30573473


BLAST search results

BLAST vs Swiss-Prot:
sp|A5AEM3|THS4_VITVI, E-value = 4e-54

BLAST vs NONCODE:
NONVVIT001224, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30524952Vitis viniferaPhaseolus vulgaris30.4524.0781.29155forward
CNT30145784Vitis viniferaMedicago truncatula30.6514.3983.33156forward

Expression of CNT30573473

Peptides detected in this lncRNA

>peptide 1 (67 aa)
FHSFYIFFKLAAYVENFLVCLTKTRIYSSFILITYTRINNDFNLRSLRRSSNNRKITIQYLYYLLFD*

>peptide 2 (73 aa)
MVRPGPKPNKTPQSNPSPVVVLPSLSDFFLISSKINKTHALDMFPYSLRICLVALSFCLSKPTFASTASRIAGP

Sequence

>CNT30573473
TTCCACTCGTTTTACATATTTTTCAAATTAGCAGCATATGTTGAAAATTTTCTTGTATGCTTAACAAAAACTCGGATATATTCTTCCTTCATTTTGATAA
CATACACAAGAATAAACAATGACTTTAACTTGAGGTCTTTGAGGAGGTCCTCCAACAATCGTAAAATAACAATTCAATATCTTTACTACCTTTTATTTGA
TTAATAAAACATGACTCATGAATAACTTTTCCCATCATTTCACTTAGTTGGAATCTGTACCAACGCTATGGAGCACAACGGTCTCAATGGTTAGGCCTGG
CCCAAAGCCAAACAAGACACCCCAATCCAATCCTTCACCTGTCGTCGTTTTGCCTTCCTTGAGTGATTTCTTTCTCATCTCGTCCAAAATAAATAAGACA
CATGCACTTGACATGTTCCCATATTCACTTAGAATATGCCTTGTTGCTTTGAGTTTCTGTTTATCTAAACCGACTTTTGCTTCAACTGCGTCGAGAATAG
CTGGGCCAC