CANTATAdb - search

Detailed information on CNT30573473

BLAST search results

BLAST vs Swiss-Prot:
sp|A5AEM3|THS4_VITVI, E-value = 4e-54

BLAST vs NONCODE:
NONVVIT001224, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30524952	Vitis vinifera	Phaseolus vulgaris	30.45	24.07	81.29	155	forward
CNT30145784	Vitis vinifera	Medicago truncatula	30.65	14.39	83.33	156	forward

Expression of CNT30573473

Peptides detected in this lncRNA

>peptide 1 (67 aa)
FHSFYIFFKLAAYVENFLVCLTKTRIYSSFILITYTRINNDFNLRSLRRSSNNRKITIQYLYYLLFD*

>peptide 2 (73 aa)
MVRPGPKPNKTPQSNPSPVVVLPSLSDFFLISSKINKTHALDMFPYSLRICLVALSFCLSKPTFASTASRIAGP

Sequence

>CNT30573473
TTCCACTCGTTTTACATATTTTTCAAATTAGCAGCATATGTTGAAAATTTTCTTGTATGCTTAACAAAAACTCGGATATATTCTTCCTTCATTTTGATAA
CATACACAAGAATAAACAATGACTTTAACTTGAGGTCTTTGAGGAGGTCCTCCAACAATCGTAAAATAACAATTCAATATCTTTACTACCTTTTATTTGA
TTAATAAAACATGACTCATGAATAACTTTTCCCATCATTTCACTTAGTTGGAATCTGTACCAACGCTATGGAGCACAACGGTCTCAATGGTTAGGCCTGG
CCCAAAGCCAAACAAGACACCCCAATCCAATCCTTCACCTGTCGTCGTTTTGCCTTCCTTGAGTGATTTCTTTCTCATCTCGTCCAAAATAAATAAGACA
CATGCACTTGACATGTTCCCATATTCACTTAGAATATGCCTTGTTGCTTTGAGTTTCTGTTTATCTAAACCGACTTTTGCTTCAACTGCGTCGAGAATAG
CTGGGCCAC