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Detailed information on CNT3057342


BLAST search results

BLAST vs Swiss-Prot:
sp|P50156|TIP11_ORYSJ, E-value = 7e-44

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30592382Amborella trichopodaMusa acuminata22.2126.0582.58155forward
CNT30579360Amborella trichopodaEchinochloa crusgalli20.7723.8982.76145forward

Expression of CNT3057342

Peptides detected in this lncRNA

>peptide 1 (30 aa)
KTLKKASIDCDFDHSITGNNERFRTQYHGK*

>peptide 2 (42 aa)
MSQQGSHVHRKYSLRPTQRQIVRRRAPTTPQRAPPAWWMHCQ*

>peptide 3 (52 aa)
MLPPTKAPNVTAGFTCPPEIFAPTDTATNSPKACANDAATSPAGVVDALSVSL

>peptide 4 (54 aa)
MQIVMIQKTKGPRIINNSNYRSCETKEKEKKKKHHCNNTKHREIKEERKALMGT*

>peptide 5 (90 aa)
MSGPAQYTQWESHDQLTTAGPKVITISNTNAFQTETPDKPKAEVVSPPELGDPVKDSAEQSDVAAHKGTKCHSRVHMSTGNIRSDRHSDK*

Sequence

>CNT3057342
AAAAACATTAAAAAAAGCTTCAATCGATTGCGATTTCGATCACAGCATCACAGGAAATAACGAGCGATTTCGAACACAGTATCACGGGAAATAACGAACC
CAACATTGCGAATGCAAATCGTGATGATCCAGAAAACAAAGGGACCACGCATAATTAACAACTCCAATTACAGGTCATGTGAAACAAAAGAGAAGGAGAA
GAAGAAGAAGCACCACTGCAACAATACAAAACACAGAGAAATAAAAGAAGAAAGAAAAGCATTGATGGGGACCTAGTAGTCGGTGGTGGGGAGTTGCTCG
TGGGTGTGAGAGATGAATACAGTCTCGTAAATAAGCCCTGCGAGGCCACCACCGATGAGTGGTCCAGCCCAGTACACCCAGTGGGAGTCCCATGACCAGC
TCACGACGGCGGGGCCGAAGGTCATAACGATCTCAAACACGAATGCGTTCCAAACGGAGACACCCGACAAGCCGAAGGCGGAGGTGGTCAGTCCACCGGA
GCTGGGCGATCCAGTAAAGGATTCCGCGGAGCAGAGTGATGTTGCCGCCCACAAAGGCACCAAATGTCACAGCAGGGTTCACATGTCCACCGGAAATATT
CGCTCCGACCGACACAGCGACAAATAGTCCGAAGGCGTGCGCCAACGACGCCGCAACGAGCCCCGCCGGCGTGGTGGATGCATTGTCAGTAAGCTTGT