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Detailed information on CNT3057335


BLAST search results

BLAST vs Swiss-Prot:
sp|P25818|TIP11_ARATH, E-value = 2e-63

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30382128Amborella trichopodaManihot esculenta37.6433.5983.21131forward
CNT3042438Amborella trichopodaPrunus dulcis28.1611.9183.6798forward
CNT30310223Amborella trichopodaCamelina sativa32.4717.2584.07113forward
CNT30361046Amborella trichopodaSorghum bicolor34.7719.4280.99121forward
CNT30154895Amborella trichopodaPrunus persica41.0918.9480.42143forward
CNT30706772Amborella trichopodaPrunus avium21.5521.3786.6775forward
CNT30579749Amborella trichopodaEchinochloa crusgalli43.6824.882.89152forward
CNT30113801Amborella trichopodaFicus carica28.1623.7385.7198forward

Expression of CNT3057335

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MLPPTKAPNVTAGFTCPPEIFAPTDTATNSPKACANDAATSPAGVVDA

>peptide 2 (39 aa)
MSQQGSHVHRKYSLRPTQRQIVRRRAPTTPQRAPPAWWMH

>peptide 3 (96 aa)
SPYDETDRDRCDYTKAALLWVDCGGVHSVDEAEGGGGQSTGGELEETTGDDSAKELGDPVKDSAEQSDVAAHKGTKCHSRVHMSTGNIRSDRHSDK*

Sequence

>CNT3057335
AGCCCCTACGATGAAACCGATCGCGATCGGTGCGATTATACCAAGGCTGCCCTTCTTTGGGTCGATTGCGGTGGCGTACACAGTGTAGACGAGGCCGAAG
GCGGAGGTGGTCAGTCCACCGGTGGCGAACTTGAGGAGACCACAGGCGACGACAGCGCCAAGGAGCTGGGCGATCCAGTAAAGGATTCCGCGGAGCAGAG
TGATGTTGCCGCCCACAAAGGCACCAAATGTCACAGCAGGGTTCACATGTCCACCGGAAATATTCGCTCCGACCGACACAGCGACAAATAGTCCGAAGGC
GTGCGCCAACGACGCCGCAACGAGCCCCGCCGGCGTGGTGGATGCATT