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Detailed information on CNT30572860


BLAST search results

BLAST vs Swiss-Prot:
sp|Q1EC66|UBQ3_ARATH, E-value = 1e-151

BLAST vs NONCODE:
NONMEST001181, E-value = 2e-112

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30512897Vitis viniferaJuglans regia67.8263.4282.11626forward
CNT30377890Vitis viniferaArabidopsis thaliana62.371.3484.17575forward
CNT3061706Vitis viniferaArabidopsis lyrata67.568.0183.31623forward
CNT30624553Vitis viniferaDaucus carota73.6749.8583.68680forward
CNT30120618Vitis viniferaCitrus clementina63.663.5384.33587forward

Expression of CNT30572860

Peptides detected in this lncRNA

>peptide 1 (58 aa)
MSLCWSGGIPSLSWIFAFTLSIVSELSTSRVMVFPVSVLTKICIPPLKRRTRWSVDSF*

>peptide 2 (29 aa)
MSCHPQAAFQQKSTFAGQGGYPPCLGFSP*

Sequence

>CNT30572860
TAGAAGAATTAATGCTTCAATTTGCTCAATTTCAAATTCTAATCAACCATTAGAAAGCATAAATTTCTAATCAAGCATACCAGATAAACAAGTAGTTTAG
GTACGAATGTCATTCACTCTTTATTTCAAGCAGAAGCAAGAAGCAACTGCATCATACCACATACTATAACATCAAACATATCCCAAAAGACAGACAGGAA
CGACCATAACCAGCCATTCAGAACCCAGACGGGCCAGACCCCCCACGAAGACGAAGAACCAAGTGAAGAGTAGACTCCTTCTGAATGTTGTAATCAGCAA
GAGTCCGACCATCCTCCAACTGCTTCCCTGCAAAGATGAGCCTCTGCTGATCTGGAGGGATCCCTTCCTTGTCCTGAATTTTTGCCTTCACATTATCTAT
AGTGTCTGAGCTCTCAACCTCTAGTGTAATTGTCTTTCCCGTCAGGGTCTTCACAAATATCTGCATCCCTCCACGAAGGCGAAGAACCAGGTGAAGGGTG
GATTCCTTTTGAATGTTGTAATCAGCCAGAGTCCGACCATCCTCAAGCTGTTTACCAGCAAAGATGAGCCTCTGCTGGTCTGGGGGGATTCCCTCCTTGT
CTTGGATTTTCGCCTTTACATTGTCAATTGTGTCAGAACTCTCTACTTCAAGGGTGATGGTTTTTCCAGTGAGTGTCTTAACAAAGATTTGCATTCCACC
TCTCAAACGGAGGACCAGGTGGAGTGTGGACTCTTTCTGAATGTTATAATCTGCCAATGTCCTGCCATCCTCAAGCTGCTTTCCAGCAAAAATCAACCTT
TGCTGGTCAGGGGGGATACCCTCCTTGTCTTGGATTTTCGCCTTAACATTGTCAATGGTATCAGAACTTTCCACTTCAAGGGTTATAGTCTTCCCATAAG
GGTCTTAACAAAGATCTGCATCT