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Detailed information on CNT30572855


BLAST search results

BLAST vs Swiss-Prot:
sp|Q1EC66|UBQ3_ARATH, E-value = 4e-158

BLAST vs NONCODE:
NONMEST001181, E-value = 2e-118

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30698491Vitis viniferaQuercus lobata68.5865.6584.01644forward
CNT30500348Vitis viniferaCoffea canephora67.9442.3984.01638forward
CNT30279009Vitis viniferaChenopodium quinoa69.2242.5484.92650forward
CNT30727227Vitis viniferaCorchorus capsularis72.6359.3683.43682forward
CNT30200107Vitis viniferaPisum sativum71.6775.9683.36673forward
CNT3097050Vitis viniferaSolanum tuberosum69.9710083.41657forward
CNT30642231Vitis viniferaCannabis sativa71.9963.7783.43676forward

Expression of CNT30572855

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MSSTLYFNQQPEATELHPHTIRHQTYPKRHTGMTTTKYQNPDPPRRRRTK*

>peptide 2 (31 aa)
MVSELSTSSVIVFPVRVFTNICIPPRRRRTR*

>peptide 3 (58 aa)
MSLCWSGGIPSLSWIFAFTLSIVSELSTSRVMVFPVSVLTKICIPPLKRRTRWSVDSF*

Sequence

>CNT30572855
CTCTATTTAGTTTCTAATCAACCATCAAATATATAGAAGAGATGTCCACATCATTTGAAAGCATAGATTTATAATCCATACCAGCAGTTAACCAAGTGGT
TTAGGTACTAATATGTCATCCACTCTTTATTTCAATCAGCAGCCAGAAGCAACTGAACTGCATCCACACACTATAAGACATCAAACATATCCCAAAAGAC
ACACAGGAATGACCACAACCAAATATCAGAACCCAGACCCCCCACGAAGACGAAGGACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGCAAG
TGTCCGACCATCCTCCAACTGCTTCCCTGCAAAGATCAGCCTCTGCTGATCTGGAGGGATCCCCTCCTTGTCCTGAATTTTGGCCTTCACATTATCTATG
GTGTCTGAGCTCTCCACCTCTAGTGTGATCGTCTTTCCCGTCAGGGTCTTCACAAATATCTGCATACCTCCACGAAGGCGAAGAACCAGGTGAAGGGTGG
ATTCCTTTTGTATGTTGTAATCAGCCAGAGTCCGACCATCCTCAAGCTGTTTACCAGCAAAGATGAGCCTCTGCTGGTCTGGGGGGATTCCCTCCTTGTC
TTGGATTTTTGCCTTTACATTGTCAATCGTGTCAGAACTCTCTACTTCAAGGGTGATGGTTTTTCCAGTGAGTGTCTTAACAAAGATTTGCATTCCACCT
CTCAAACGGAGGACCAGGTGGAGTGTGGACTCTTTCTGAATGTTATAATCTGCCAAAGTCCTGCCATCCTCAAGCTGCTTTCCAGCAAAAATCAACCTTT
GCTGGTCAGGGGGGATACCCTCCTTGTCTTGGATTTTCGCCTTAACATTGTCAATGGTATCAGAACTTTCCACTTCAAGGGTTATAGTCTTCCCAGTAAG
GGTCTTAACAAAGATCTGCATCTGTTATGTTACAATAGG