Detailed information on CNT30572490


BLAST search results

BLAST vs Swiss-Prot:
sp|Q655S1|FTSH2_ORYSJ, E-value = 2e-65

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673977Vitis viniferaSetaria viridis23.4618.5581.95133forward
CNT30521684Vitis viniferaSetaria italica40.3924.7682.1229forward
CNT30373918Vitis viniferaArabidopsis thaliana59.9648.8579.12340forward
CNT30709814Vitis viniferaGlycine max50.2676.4182.11285forward
CNT30173485Vitis viniferaTrifolium pratense24.6926.5284.29140forward
CNT30144485Vitis viniferaMedicago truncatula34.7430.5484.77197forward
CNT30370551Vitis viniferaOryza glumipatula37.3924.9180.66212forward
CNT30557333Vitis viniferaPanicum hallii26.6337.9483.44151forward

Expression of CNT30572490

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MTSLMRKPLAPPHKLFHYQVRQVDRPFPTRQADDAAICSIVLIYL*

>peptide 2 (60 aa)
QQHHQKLHLCLAPFGTWLLIDQRQGGSQAHQGHPFLQMNALREGKGLQLRLVGKQGCQSS*

>peptide 3 (36 aa)
MVPFSNKSTFFTLSLSRYSKNLEYDILDEETPCSSA*

Sequence

>CNT30572490
CCCAGCAACATCATCAAAAGTTACACCTGTGTTTGGCTCCATTTGGAACTTGGCTTTTGATTGACCAAAGGCAAGGGGGAAGCCAGGCCCACCAGGGCCA
CCCATTCCTCCAGATGAACGCCTTGAGAGAAGGAAAAGGCCTCCAATTAAGATTAGTGGGAAAGCAAGGTTGCCAATCAAGTTGAATAACAGAGAACCTG
AGTCCTCTTGAGCATTGTGTGCAGCAAAGTCAATGTTCTTTTCTCTGAATTTCTGAAGGAGCTCCTGGCTGAGTCCTGGGAGTTGCACACGAACTCGCTG
CACCCGGTTACCCAACTCAGGAGAAACGGCTTCAACAATAGCTATGGTTCCATTCTCAAACAAATCTACTTTTTTTACCCTATCCTTGTCCAGATACTCC
AAAAATCTAGAATATGACATCCTTGATGAGGAAACCCCTTGCTCCTCCGCATAAGCTTTTCCATTACCAAGTAAGGCAGGTGGATAGACCATTTCCCACA
AGGCAAGCTGATGATGCTGCCATCTGTAGTATAGTGCTGATTTACTTGTAGAACAAGATGGAAGCAC