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Detailed information on CNT3057198


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30619453Amborella trichopodaSesamum indicum24.3413.1888.0492forward

Expression of CNT3057198

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MDLLTLSAAELTFVLLVWWVATKTISLCLSMDLEMLIHEKRY

>peptide 2 (48 aa)
ALWLAPCLRTSLHFGSYIRNFLLCSRGDIIFFKEYYPVRSLCLGRQVR*

>peptide 3 (83 aa)
LFGSLRAYAPHSISGVTFVTFCYVHAVILSFSKSTTPYVVFVWGDRCGREVPHFDSRPTSISDPRSGITTSGLFFGPEPAGSR*

Sequence

>CNT3057198
GCTCTTTGGCTCGCTCCGTGCTTACGCACCTCACTCCATTTCGGGAGTTACATTCGTAACTTTTTGTTATGTTCACGCGGTGATATTATCTTTTTCAAAG
AGTACTACCCCGTACGTAGTCTTTGTCTGGGGAGACAGGTGCGGTAGAGAGGTTCCCCACTTCGATTCTCGTCCCACTAGCATCTCCGATCCAAGATCAG
GGATTACTACGTCAGGTCTTTTCTTCGGTCCAGAGCCGGCCGGTAGTCGGTAATGGACCTACTTACCTTATCAGCAGCAGAGCTCACCTTTGTTCTATTG
GTTTGGTGGGTGGCTACCAAGACGATTTCTTTATGCCTATCAATGGACCTCGAGATGCTAATCCACGAAAAACGATAC