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Detailed information on CNT30571978


BLAST search results

BLAST vs Swiss-Prot:
sp|P18260|ATPAM_HELAN, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30618998Vitis viniferaSesamum indicum25.0570.8293.251155forward
CNT30200883Vitis viniferaPisum sativum30.4396.6993.941403forward
CNT3091389Vitis viniferaSolanum tuberosum2.4528.6893.81113forward
CNT30194088Vitis viniferaSecale cereale18.4286.5494.46849forward
CNT30226090Vitis viniferaHordeum vulgare11.8954.3792.88548forward
CNT30397046Vitis viniferaTriticum turgidum1.6323.089675reverse complement
CNT30543277Vitis viniferaBrassica napus5.7743.4692.11266forward
CNT30438827Vitis viniferaAegilops tauschii7.2599.795.51334forward
CNT30212621Vitis viniferaHelianthus annuus33.0687.2996.521524forward
CNT30127030Vitis viniferaCorymbia citriodora4.6410093.93214forward
CNT30684056Vitis viniferaTriticum urartu33.1263.9293.981527forward
CNT30596036Vitis viniferaOryza meridionalis3.153.1688.81143forward
CNT30481419Vitis viniferaChara braunii6.3133.8485.57291forward
CNT30103343Vitis viniferaOryza rufipogon8.4852.4191.82391forward

Expression of CNT30571978

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MAQPEYGARNCRGAGSEAVAATRMEYSKAFASERI*

>peptide 2 (34 aa)
MPESQHQGLTQIEQGRPLRDIVPIPVLNYRRLVS*

>peptide 3 (31 aa)
MIVACPPHLTAGSQLQLTLGTFKVRLKLEVQ*

>peptide 4 (30 aa)
MTRICFSIGSGAYCGCFETSVSLAPLLSNA*

>peptide 5 (29 aa)
MRMRVVGTRRLIFDQKWSTRGLIFDQKWS*

>peptide 6 (29 aa)
MFSRSLLAERHTGKKGKSVTGKIKSDWNR*

>peptide 7 (86 aa)
MRAFHYRGNIPPWHSQNMGPEIAEEQDPKRWLLQEWNIPKHSLLKEFELIVPQLSVSVQLLHRHNTMSHYQRWPLSSKAFGLIWYR*

>peptide 8 (55 aa)
MNSKIESRENAAFCFDRIRFFLIKSREKKGNSKEFPFSNSTPIAPWLLCPSPNID*

Sequence

>CNT30571978
CTTTCTTTCATGATAGAGTCTCTAAGAGAGAATGCAAGGTTCCGCCTGAGTTGATTGAGGAAAGAATGACTCGATGAGGAATATAAAAGGAGCGCAGCGA
TGTCTGCAAACTCGTCGAAGACTTCTTCGACCGAAGAGCACACAAGCATAGAAGACAGCCATCCCATAGAATAGAAAACCAACTTCAGGCAGTGGATTCG
AAGCAAGAAGGATTTTTAGTCCTTTCCCTTGGGCAGTGGATTGCCTGCTCCTCGAAGCAAGGAAGGGAATTAAGATGGCATAGAATGCCCTGTTAGCAAG
AAGGAAAGGAGTTGGCTTACCGCATCTACCTTCTCATCGCGGGAGAAGGGCTGGGGCGTTAACTAAGTACTAAAGCTGCTGGAGCGGCTGCCTTCGTTGA
TTCCCCACGAAGGAATCGGAATATCGCTACTTCCTCTTACTGTCCTAAGCGGGGGATAAGGATTAAAATCCTTGTGTGAAGGAAAGGAAAGGCTGTAAAA
GTCGTTGACCAGAAATCCGGTCTTCGAGAAGGAGCTGCTAAGGAAGAGAATACAGAGGGCTTTAGCGGAAATCTTGTATTTCTTAGTTGAAGTTTAGTGG
GGCTTGGAAGCCCTGCAAGTGTGATAGTATAGGAATAGGCGGGAGGAGTGAAGAATTCACATAGAGTGATCGGTAAGCTGACCCGTATAGATAGACTGAC
CCGTAAAGGTTACGAAGTCAAAGTCAAATCAACCATTCAATTCCGGACCTAGGCGAAAGAGAGGCGAGACATGAACAAATAGAGTAGAGAAGATCCATTC
CTAGTCATCCTAGGGCAAAGAGGAAGCCCCCCGCCGAAGGCGAAGTAAGCACCGTAGATAGATATAGTGTAAGCAAGGGCAAGACCGAAATCAATAGAAT
CTACGCAAAGGCAATTGGTTCATACTCAAGGTAAGCTGACCCGCACTCAATAGAAGAGGCAAGGAGAAAGGTTGCTTTTAGGTCGATTTCAAGCAGAAGG
AGAAAGAATAAAGCTTAATAGTAGCACAAAGACAGGGGACGCAGAAAGAAAAATAAAATATCTTGTAGCCCTTAACACAGGAGAAACTTCTTTCAAGGAT
AAACAACTAAGACAGGCAAGCGAGCTTCAGCTGCGCGACCGGGGAGGAAGACAACCTTTAGCTAGAAGACAAAAGGAGTAGCGGGAAAGGGAACTCAAAA
ATATGATAGTGGCTTGCCCACCCCACCTCACCGCGGGTAGCCAACTTCAGCTCACCCTAGGAACCTTTAAGGTTAGACTTAAGCTTGAGGTGCAGTAACA
TGAAGACATTCCTTGGAAGGTTGCTTAGCTGGAAATTTATTACTTGAAATAGGTAACTTCGTCTGGTAGCAGAGCTGCCTCCGAAGAAGACAACTTACGA
AAGAGGACTCTCTACGGAATGGGAGAATCCAGCTATTGAATATAACAAAGTGAAGCAGGACTGCACTCGCTACGCAGTTGAATAGACAGGAAGACAAGAA
GCAAGGGCTGGTGGGCTGGTAAACTCGTTCCGCAGACTTATCGAGGCGATATTTTATACTAAATACCAATCGATCGAAATCAATCCTTCGGAGGCTCTAA
AGGTAAGGCAAAAAGGCATAATTCGATGCTCCAACTAAAGGAAAAGCCATAAAGCACAAACCAAGATCCATAACATAATACTAAAACCAAAATGAGAATG
AGGGTGGTCGGAACGAGAAGGCTGATCTTTGATCAGAAGTGGTCTACGAGAGGGCTGATCTTTGATCAGAAGTGGTCGTAGATCATAGGTAAGGCAAAGC
GCTTTCTTTTAAGAATGCATCTGGTTCCATCTTTCTTTCGTTAGTTAACCCACCCTTTTCTAAAAGGGATTGTAGAAATTCTGGTTTTATACTACTTGGA
ATGGCTCTCTCATATTGAGAAATTCTGTCTAGTGGCATTCGATCACAGAATCCATTGACAGCTGCATAAATGACTAGAATTTGTTTTTCAATTGGAAGTG
GTGCATATTGTGGTTGTTTCGAGACTTCTGTAAGCCTTGCACCTCTATTGAGTAATGCCTGAGTCGCAGCATCAAGGTCTGACCCAAATTGAGCAAGGGC
GGCCACTTCGCGATATTGTGCCAATTCCAGTTTTGAACTACCGCAGACTTGTTTCATAGCTTTCAACTGAGCGGCAGACCCGACGCGACTGACAGATAAG
CCGACGTTAATAGCAGGTCTAATTCCGCGATAAAAGAGCTCTGTTTCCGAACAGATTTGTCCATCCGTAATGGGGATCACATTGGTGGGAATATAGGCCG
ATACGTCTCCAGCTTGTGTTTCAATGACGGGTAAGGCGGTCAAGCTACCTGCACCTGTCTGGTCCGATCGTTTAGCGGCTCTTTCTAAGAGACGGGAATG
TAAATAGAAAACATCGCCTGGGAAAGCCTCACGGCCTGGTGGTCGGCGTAACAATAATGACATTTGTCGATATGCCACCGCCTGTTTACTAAGATCATCA
TAGATTATTAATGCGTGCATTCCATTATCGCGGAAATATTCCCCCATGGCACAGCCAGAATATGGGGCCAGAAATTGCAGAGGAGCAGGATCCGAAGCGG
TGGCTGCTACAAGAATGGAATATTCCAAAGCATTCGCTTCTGAAAGAATTTGAACTAATTGTGCCACAGTTGAGCGTTTCTGTCCAATTGCTACATAGAC
ACAATACAATGTCTCACTATCAGAGGTGGCCTTTGAGTTCAAAAGCTTTTGGTTTAATATGGTATCGATAGCTATAGCTGTTTTTCCAGTTTGTCGGTCC
CCAATTATAAGTTCTCGTTGACCACGGCCTATAGGAACCAGGCTATCTACCGCTTTTAAGCCTGTTTGCATAGGCTCGTGCACAGATTTACGTTCAATAA
TCCCAGGGGCTTTCACTTCGACACGTCTTCGCTCGTGATCGCTTAGAGCCCCTCTTCCATCAATAGGTACTCCCAACGCGTCGACCACACGCCCTAGCAT
AGCCTTTCCCGCAGGAACATCCACAATAGATCCAGTGCGCTTGACAAGATCTCCTTCTTTAATAGCGGTATCACTACCAAAGACAACAATCCCTACATTC
TCATTCTCAAGATTCAAGGCTATTCCTTTCACACCGCTGGCAAATTCAACCATTTCCCCAGCTTGAATCTCGTTCAATCCATAAACACGTGCAATCCCAT
CTCCAACTGAGACCACTCGACCGATCTCATCCACTTTCAAATTCGTGTAAAAGTTGGTAATCCTACTTTCTAATAGAGTCGTGAGTTCCGCAGCTCTGGG
AGAGAATTCCATAATGAATTCAAAGATTGAGTCAAGGGAGAATGCCGCTTTTTGTTTTGACAGAATACGATTTTTTTTAATAAAGTCAAGAGAAAAAAAA
GGAAATAGCAAAGAATTTCCGTTCTCTAATTCTACTCCCATAGCCCCCTGGTTACTATGTCCCTCCCCCAATATTGACTAAGACCGCTACGGCTTGGATG
TAGCATTCACCCGTTAGTCCATTGAAATACAGATCCTTAACAGAATATAAAACAATAGGTAAGTTCTCGGTATCTCCACAAACTTCCTGGCAAAAGGCCG
GTAGCGTCCAATCATTTGGAAGTGGATTTTCCCCAAGTCGAAGAAGCTCCGACATACGCCCATAGAGGCAGTTCTTAGCGGAACTCAAAGCATTCTGACA
GAGTCTATTGATTTCGGGGTCTTGTCCCCGATTATTCCAAACACAATTAGCTAACACGGACAAAGCATCAAATAAGGAAATTACTTGTACCATAGAGCGA
TCGATTCATGTTCTCTCGCTCCTTGCTCGCGGAGCGGCATACCGGAAAAAAGGGGAAAAGCGTTACTGGAAAGATAAAGTCGGATTGGAATCGATGACTT
AAGCCCCTTTATAAAGGGCATTCAATTTCAAGGGCGTGACTCGCCATTTCAGAGAAGGGAAAGGCTTCTCTGTCGTAGGCGACAGAGGGTGCCGCCTAGA
AGAAAGATCTAGACTAGACTAAGGACTCTCAGGAAGGACGAGAGCCCGAAAACTGTGAATCTCGATCTTTCTTCTCTTTAGACATTTGTCTCACTTTTGG
GCTTTGACTAACTTTCTTCTTAGCTTAGGAAAGAAGGAAGAAGACCATTGATCTTCTAATACGTCACCGGTGTACTTACTTCAACACAAGAAGCGTGGGC
CTCCTCGATAGAAGCACTTTCTTTGTCTTGGTCCCAATTCAACTACATCCGCTATAGCATTTTAAATAAGTGGTTCTTGAGTTCGCGGAACACTAACAAA
AAAAAAAGAGTCAGCTGGTGCGAAATGCAGACCATCGCGGTAAACTGCGCATCGTGTTAAGGCTAGGGCCGCTGGGTTGATTCTATAATAGACAGGAAAC
ATCCGTTCTACTTACTATAGGATCGTTGGGGACGACGGTTCAAGCGACATCCATTCCCCCGGAGCCAAAGATTCCTTCTATAAAGACTAAGCCCAAGTGG
GGGGAGGGGCCCAGTTGAAAGACTAGCCTCCGGCCAACTTTCTAACCCCGGCTAGCTAGGTTAAGCACTATACAAGGTATATTCAATCAACGAAACGTAA
TGCGTCTGCC