Detailed information on CNT30571894


BLAST search results

BLAST vs Swiss-Prot:
sp|P51070|THS2_VITVI, E-value = 0.0

BLAST vs NONCODE:
NONVVIT001225, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30381286Vitis viniferaManihot esculenta18.8932.3679.59245forward

Expression of CNT30571894

Peptides detected in this lncRNA

>peptide 1 (49 aa)
MFGPLKQVGRVVVQWRYLDLIQQLQLLTHHQKGLDPLKSLNGFQKAHEK*

>peptide 2 (52 aa)
MGFRRPTKSNNRDFRAYHKNSCSCIILCEILSSSENSPTCIAALMIQHHSSN*

>peptide 3 (35 aa)
MNVWAAETSWKSGRSMEVSGSDPTITAADPSPKRA*

>peptide 4 (40 aa)
MSDPKQGVPITNTKWAKSLSQALLYILGNQSRHIRPQMKG*

>peptide 5 (76 aa)
MVKPGPKPNKTPQSNPSPVVVLSSLSDFFLISSKINNTHALDILPYSLKMCLVASSFFFSKLSFASIASRMAGPPG*

Sequence

>CNT30571894
TTCTTTTTTATTCCATTCTTTTCTTAACATCCAACGATCTTTAAAAGAACACAATGGATGTTTATACAACTTTTGAGGGAATTTCATCTAGATAACGAAA
CTGTAAGAACTTGATGTCTCATCCCTTTTAACTTGAGGTTACTAATGAAGCCCTCCAACAAGCTCTAATTTGAACCACAAACATCAATTTTAATAAAGAA
TAAAAGATGTTACAAATAGAAGACATATATGTCTTTATTAACTCCTATTTGATTTAATTAGAAATTGTCCCCTTCTGATTTTTTTCCTTTCACTCAATTT
GTAGCCCCAGCAACGCTATGCAGCACAACAGTTTCAATGGTCAAACCTGGCCCAAAACCAAATAAAACGCCCCAATCTAATCCTTCACCTGTGGTGGTCC
TTTCTTCCTTGAGTGATTTCTTTCTCATCTCATCCAAAATAAACAACACGCATGCACTTGACATATTACCGTACTCACTTAAGATGTGTCTTGTTGCTTC
AAGTTTCTTCTTCTCCAAATTGAGTTTTGCTTCGATTGCATCTAGAATGGCCGGGCCACCTGGATGAGCGATCCAAAACAAGGAGTTCCAATCACTAATA
CCAAGTGGGCCAAAAGCTTGAGTCAAGCACTTCTCTATATTCTCGGAAATCAGAGTAGGCACATTAGGCCACAAATGAAAGGTTAGACCCACTTCACGTA
AGTTGCCAGCAATAGCACCTTGTGTATTAGGAATGAATGTTTGGGCCGCTGAAACAAGTTGGAAGAGTGGTCGTTCAATGGAGGTATCTGGATCTGATCC
AACAATTACAGCTGCTGACCCATCACCAAAAAGGGCTTGACCCACTAAAGAGTCTAAATGGGTTTCAGAAGGCCCACGAAAAGTAACAACCGTGATTTCA
GAGCATACCACAAGAACTCGTGCTCCTGCATTATTCTCTGCGAGATCCTTAGCAGTTCGGAGAACAGTCCCACCTGCATAGCAGCCTTGATGATACAACA
TCACTCTTCTAACTGATGTTTCGAGGCCTAGAAGATTGGCTAGTTTATAGTCTGCACCGGGCATTTCTACTCCCGAAGTTGTACAAAATACAAGGTGAGT
GATCTTGGACTTAGGCTGGCCCCACTCTTTAAGAGCCTTCAATGTGGCCTCCTTACCAAGCTTAGGTACCTCAGCAGTGATAATTTCTTGGCGTATGTTG
AGCGATGGAGCCATGTAAGCACCCATATTTGGGTGCTCTTCAAGCATTTCTTCAGTCAAATGAATGTATCGCTTTTTGATCATTGATTTCTCACCTA