Detailed information on CNT30571726


BLAST search results

BLAST vs Swiss-Prot:
sp|P86387|PLDA1_CARPA, E-value = 3e-83

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30404571Vitis viniferaBeta vulgaris22.0820.7681.73104forward
CNT30630038Vitis viniferaVigna unguiculata55.8438.5179.85263forward
CNT30559850Vitis viniferaActinidia chinensis39.0737.1782.07184forward
CNT30682318Vitis viniferaTriticum urartu29.7242.6884.29140forward
CNT30705729Vitis viniferaPrunus avium76.4372.8781.67360forward
CNT3021748Vitis viniferaPopulus trichocarpa40.7620.8789.58192forward

Expression of CNT30571726

Peptides detected in this lncRNA

>peptide 1 (28 aa)
MLRSMILSFPLTSPALAASSGVSGKPKAA

>peptide 2 (35 aa)
MISLYIISIVLLCQSNIAWTDPLSGIPSGHIGTTI*

>peptide 3 (72 aa)
MQSTNVFNLNALIRSPAKRASQKILIFNINEILCPSNSINISILNAPVNDIVLPTDKPSSCCLFRCLREAKGS

Sequence

>CNT30571726
GCGGAGGAGATGACCAGGGAGAAAAATGTTAAATAATTTCTAGGGTCATCCTCAATACCCTTATCAGCAAGAGCCTTAATGATATCTTTATACATCATCT
CCATTGTCCTCCTCTGCCAATCTAATATTGCCTGGACTGATCCACTCTCTGGCATACCCTCTGGCCACATTGGAACTACAATATAAACAGTGAACTTCTC
CCCTGCCTCAATCTTACTTGCAATCTTCAGTGAGAGTTCCTTTGGAATCAGATGCAAAGCACCAACGTCTTCAATCTTAATGCCCTCATCAGGAGCCCAG
CCAAAAGAGCTTCCCAGAAAATACTGATTTTCAATATAAATGAAATCCTTTGCCCGTCGAATAGCATTAATATAAGCATCCTGAATGCTCCGGTCAATGA
TATTGTCCTTCCCACTGACAAGCCCAGCTCTTGCTGCCTCTTCAGGTGTCTCAGGGAAGCCAAAGGCAGCC