Detailed information on CNT30571197


BLAST search results

BLAST vs Swiss-Prot:
sp|P33629|TBA_PRUDU, E-value = 7e-65

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30640127Vitis viniferaNymphaea colorata69.5434.3486.13274forward
CNT30504800Vitis viniferaNicotiana attenuata58.1251.8186.46229forward
CNT30709049Vitis viniferaGlycine max77.6644.1687.25306forward
CNT30224654Vitis viniferaHordeum vulgare77.6620.0481.05306forward
CNT3086234Vitis viniferaVigna radiata68.5350.9487.41270forward
CNT30144939Vitis viniferaMedicago truncatula56.645.7986.55223forward
CNT30265526Vitis viniferaBrassica rapa76.6530.4186.09302forward
CNT30624589Vitis viniferaDaucus carota32.2325.693.7127forward
CNT30482824Vitis viniferaChara braunii61.4231.878.93242forward
CNT3024728Vitis viniferaPopulus trichocarpa73.3535.5988.58289forward

Expression of CNT30571197

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MRENTSATLVEFEIMHTALCTLARSPPGTTVGGW*

>peptide 2 (53 aa)
TRLPRHHLHPQPTLHLPPHNPSQGQQDPHGLQRTHLPPYPHQHTSAQMPSLRT*

>peptide 3 (61 aa)
LVSLVTIFTLSRLCTYLLIILLKGSKILTGFRELTFLHTLTNIPVHKCPLCVHEIKFVINA*

Sequence

>CNT30571197
ACTCGTCTCCCTCGTCACCATCTTCACCCTCAGCCGACTCTGCACCTACCTCCTCATAATCCTTCTCAAGGGCAGCAAGATCCTCACGGGCTTCAGAGAA
CTCACCTTCCTCCATACCCTCACCAACATACCAGTGCACAAATGCCCTCTTTGCGTACATGAGATCAAATTTGTGATCAATGCGTGAGAATACCTCTGCA
ACACTGGTAGAATTTGAAATCATGCACACAGCCCTTTGCACTTTGGCAAGATCACCACCCGGAACAACAGTTGGGGGCTGGTAGTTGATACCACATTTGA
ATCCAGTCGGGCACCAGTCAACAAATTGGATGGTGCGCTTGGTTAGTCTGGAATTCAGTCACATCCACGTTTAGGGCACCATCAAACCTTAGAG