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Detailed information on CNT3057109


BLAST search results

BLAST vs Swiss-Prot:
sp|P60287|RPOC1_AMBTC, E-value = 5e-133

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30703171Amborella trichopodaQuercus lobata50.919.5885.111142forward
CNT3019361Amborella trichopodaCitrullus lanatus11.4684.2690.66257forward
CNT30632296Amborella trichopodaVigna unguiculata17.3946.5985.38390forward
CNT30200640Amborella trichopodaPisum sativum8.6530.788.66194forward
CNT30293877Amborella trichopodaTriticum aestivum3.0820.9185.5169forward
CNT30220823Amborella trichopodaHordeum vulgare25.117.8182.59563forward
CNT3085011Amborella trichopodaVigna radiata13.5193.5279.87303forward
CNT30541456Amborella trichopodaBrassica napus9.7224.5288.53218forward
CNT30314046Amborella trichopodaCamelina sativa51.273084.351150forward
CNT3082978Amborella trichopodaBrassica juncea51.5814.2584.71157forward
CNT30129950Amborella trichopodaCorymbia citriodora10.5247.5888.56236forward
CNT30716479Amborella trichopodaMalus domestica golden4.936.1889.09110forward
CNT30154455Amborella trichopodaPrunus persica9.0126.9385.15202forward
CNT3039151Amborella trichopodaCucumis melo23.5461.7586.36528forward
CNT30150636Amborella trichopodaBrachypodium distachyon2.9428.9586.3666forward
CNT30104767Amborella trichopodaOryza rufipogon18.1569.179.12407forward

Expression of CNT3057109

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MQSRCSIQQYRVSFHNLLKYFPYNWFFFPNFTFSNSYVGCNMLSD*

>peptide 2 (43 aa)
MMNSLKLKEYFGIHKGSIRSFRFLLRLDGYAMVSLEVKHTCDG*

>peptide 3 (56 aa)
MIFLSSHSFSADLSSRNSFHYTNEQSVIIRKSGSANCSLIAPAPIDISLFLNRLKH*

>peptide 4 (32 aa)
MTERPTRLPSRVSRNLPSLPSITSEKDLQTLL*

>peptide 5 (39 aa)
MSGSSSTKDAFFTRYKNSLLIDSLRNRQWIIPLSFGSIE*

>peptide 6 (38 aa)
MLSQFHLSNQKILSSYDFFIFPFILSGSFFPQFLPLYQ*

Sequence

>CNT3057109
AATAGCCGAAGACAAGAGATTCATATAAGAAAACATAAGTAAACTGGCTTCCGCTTGAGCTTCCAAAGACAAAGGTACATGAACAGCCATCTGATGCCCA
TCAAAGTCTGCATTGAATTCCTTACGAACTAATGGATGTAAACAAATAGCACGTCCTTCCACTAGAATAGGTTGGAGCGCCTGTATGCCTAATCTATGCA
AAGTAGGTGCTCTATTCAACAATACAGGGTGTCCTTCCATAACCTTTTGAAGTATTTCCCATACAATTGGTTCTTTTTCCCGAATTTTACTTTTAGCAAT
TCCTATGTTGGATGCAACATGTTGTCTGATTAGACCACGAATTACAAATGTCTGAAACAACTCTATTTCTATTTCTCGGGGTAATCCACATCGATGTAAT
GAAAGCGAAGGGCCCACCACAATGACAGAACGACCGACCCGTTTACCAAGTAGAGTCTCGCGAAATCTTCCCTCTTTGCCTTCAATTACATCTGAAAAAG
ACTTGCAAACTTTATTGTGACCGCCCCTCATTGGTTGTCCACGGATCCCATTATCAAGAAGTGTATCTACGACTTTTTTCTTGTACTAATTTTTCTTGAT
ACATCACTGACTGATTCCCCTGGCGTAGATCTACTTGTTGTTAATGGATCGATAAGAGTATTATTCCGATAGATAACTCTTCTATAGAGTTCATTAATAT
TCGAAGTCATTGGTTTACCCCCTCTATCTGAATGATTGGCCTCAACTAGGGAGGAAGAACTGGTAATAGGCACAAAACCATCCGTTCTGGTTCTACATTT
GTTCTAAGAATATGCTTAGCCAATTCCATTTGTCTAACCAAAAAATCCTTTCTTCTTATGATTTTTTTATCTTCCCATTCATTCTCAGCGGATCTTTCTT
CCCGCAATTCCTTCCACTATACCAATGAACAATCTGTAATAATTCGCAAATCCGGATCGGCAAATTGTTCTCTGATAGCACCTGCTCCAATAGATATTTC
TCTATTTCTAAATAGATTGAAGCATTAGGTAGTAAAAAAAGTGGGATGATGTATTTTCGAGATTGAATTTCATATTCGAATGAACCTCGTAATCGTAAGA
AAGTGGGTTTTTTGGCTATGGGCCTAGCAAAAGAGAAATTGGGATAAGTTCCTATAGAATCCCCCCCTCAAAATCAGACGTGAAGGTTTCCTCTCATCTG
GCTCAAGTAGTTGTACCAAATAAAGGGGTTCTCACTCCCAAATTTTACCCTAGACAAATCCCACAACTACTCCTTACTCAAGTTCTCGGTGAGGACCAAT
CCATATTTCATTGATTCATCTCTTCTCCTCAATTACTCATTCAATTACGACAAAGTGGAATTATTGAGTAGTCTCCTTCCCTTCGAATGATGAATTCTCT
TAAATTAAAAGAATACTTTGGAATTCATAAGGGATCCATTCGATCTTTTAGGTTCCTACTTCGCCTCGACGGTTATGCTATGGTGTCCCTTGAAGTGAAG
CATACATGCGATGGATAGACTCCTGTAACCATGTAATATCTGCTTATTTGAACAGAACCTTTTTCTAAACTAAAAGAAATACAATGTCTGGTTCTAGTTC
CACAAAAGATGCTTTTTTTACGAGGTACAAGAATTCCCTATTGATTGATTCGCTACGGAATCGACAATGGATCATTCCTCTTTCATTTGGAAGTATTGAA
TAGACCCATAATTCTGAGCTTCATGTTACTTCTCCTAAGAGACATGTCAGAGCTGGAGGCATCCCAATTGCATTGAACGGGATGACAGGTTTTCATTCTG
AATCTGTAGAATTGTAATTTTGATCAAATCACACATCGCAGTATACTAGGCCTTCTAATTCTTTAAGAGCTTTATCTGAAAGATTCGTGATATAACTGGA
AAGACGTTTCAAATACCATACATGAGTCAATGGACATGCCAGTTTGATGTATCCCATTTGATATCTTCATAGCTGAGAATCAATAGATTCGACTCCGCAT
TGTTCACAAAATTTCAAGTCTTCTTTTTCATCCCCGATGACTCGGTAATTTCCACAAACACAAATTCCACTTTTGATAGGCCCACAGATTCTTTCACAAA
ACAATTCATCTTTTTCCGGTTTATTGCTTTTGTAATGAAAAGTATAGGGTTTTGTCACTTCTCCAACCATCTCTCCATTAGGTAGGATTTTGTTGGCCCA
AGCAGTTATTTGTTGAGGAGAAACTAATCCAATTCGAAGTTGT