Detailed information on CNT30571043


BLAST search results

BLAST vs Swiss-Prot:
sp|Q94B08|RDL1_ARATH, E-value = 1e-38

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30586416Vitis viniferaMusa acuminata17.230.6979.78178forward

Expression of CNT30571043

Peptides detected in this lncRNA

>peptide 1 (31 aa)
PPLRFHTFQRSCIPHQSLCRGSLFQYPSHRF*

>peptide 2 (33 aa)
MESVQDNGPGLSILHRPYLGPTQIQMINYLTPH*

>peptide 3 (56 aa)
GLHCDSTLSREVAFPIKACVGVVFFSIQATVFDDEVESIVHETAIAAHVVLCIAVY*

>peptide 4 (56 aa)
MPITSSSLLQLLDRSAADEATKKRKRRVDMDSAMAGKREDVEEIMFGCQNGLWMVKD

>peptide 5 (51 aa)
MRPPLQPMSYSVSQSTSSCSDREMSSPVTIWFIPSTAATVENAQQLPAQQR*

>peptide 6 (37 aa)
MRRQRRGREGLIWIAPWLVNEKMWRRSCLGVKMGCGW*

Sequence

>CNT30571043
GGCCTCCATTGCGATTCCACACTTTCCAGAGAAGTTGCATTCCCCATCAAAGCCTGTGTAGGGGTAGTCTTTTTCAGTATCCAAGCCACCGTTTTTGATG
ATGAAGTCGAAAGCATAGTCCATGAGACCGCCATTGCAGCCCATGTCGTACTCTGTATCGCAGTCTACTAGCTCTTGCTCTGATAGAGAGATGAGTTCGC
CGGTAACTATCTGGTTTATACCTTCCACTGCTGCTACCGTTGAGAATGCCCAGCAGCTACCTGCTCAGCAGAGGTGATGGAGTCAGTTCAGGACAATGGG
CCGGGTCTATCAATTTTACATAGGCCCTATCTGGGTCCAACCCAAATACAAATGATAAATTACCTAACTCCCCACTGAAATCTAAGTAAATATTTCTTTT
ATATTTATCGAAAAAAATACTCTCTTTTTTTAACAAGTCGTGTCAGCTGGAGAAAATAGTTTGGTATTATTCTAAAGTGAATAAAATAGCCCACGTTCCA
ACGGTGTCTCCAACCAAAACTTCAAACCTACCATCCAACTAGCAAACAACCTGTATCGCAATGACCAAAATACCCTTGACTTAAAAAAATCTAATCTAAT
CAACGAATGGCATTCGAGTCAATTCAGAAAAAATACTGACCGCAACTTCTTTGATCTTTCACCGGATTCACGGCGCCAGTCTCTCTCCAGTCGACGGATT
CCGGCAGAACCTCGCCGGGCATGACGGCGTAACGCGGGCTGGCGTTTTTCAACTTGGCAAATCTTCGCTTGGGATCGCTCCTGGTGCCCAGGTAGATAGC
TCGGTACTCTTCGTTGGTGAGTCCGTTGTAGGCTTTTCCGTGCTTGGCCATCCACCACTGATACATGCCCATCACCTCCTCCTCGCTTCTCCAGCTGCTG
GACAGGTCCGCTGCGGATGAGGCGACAAAGAAGAGGAAGAGAAGGGTTGATATGGATAGCGCCATGGCTGGTAAACGAGAAGATGTGGAGGAGATCATGT
TTGGGTGTCAAAATGGGCTGTGGATGGTAAAGGAT