Detailed information on CNT30570762


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30639490Vitis viniferaNymphaea colorata22.8914.2983.1695forward
CNT30316651Vitis viniferaCorylus avellana48.9241.2684.24203forward
CNT30703860Vitis viniferaQuercus lobata39.2860.1587.73163forward
CNT30500052Vitis viniferaCoffea canephora39.2862.2185.89163forward
CNT3070513Vitis viniferaQuercus suber39.2823.9486.5163forward
CNT30492602Vitis viniferaOlea europaea34.2221.2380.28142forward
CNT30169745Vitis viniferaPistacia vera19.5227.6590.1281forward
CNT3096605Vitis viniferaSolanum tuberosum41.220.4380.12171forward
CNT30566880Vitis viniferaActinidia chinensis54.724.4978.41227forward
CNT30543367Vitis viniferaBrassica napus31.5717.6380.92131forward
CNT30146672Vitis viniferaMedicago truncatula36.3963.7182.12151forward
CNT3059911Vitis viniferaArabidopsis lyrata35.1842.284.93146forward
CNT3076889Vitis viniferaBrassica juncea34.4632.9582.52143forward
CNT30479817Vitis viniferaArabidopsis halleri35.1839.6783.56146forward
CNT30152051Vitis viniferaPrunus persica53.7328.4182.51223forward
CNT30704154Vitis viniferaPrunus avium46.9924.5383.08195forward
CNT3022456Vitis viniferaPopulus trichocarpa38.823.1383.23161forward
CNT30120862Vitis viniferaCitrus clementina49.6437.8783.5206forward
CNT30114984Vitis viniferaEutrema salsugineum30.644.185.04127forward

Expression of CNT30570762

Peptides detected in this lncRNA

>peptide 1 (75 aa)
GGVSEVFQESRGGVSAVFHVNAVLSYLSPLTPSAEAMDSSSAISSGVSFTDKAPMFCLRFSILVVPGMGHTSSPW*

>peptide 2 (34 aa)
GWSVRGLPGIKGWSVCCLPCKCSALISITLNTIC*

Sequence

>CNT30570762
GGGGTGGAGTGTCAGAGGTCTTCCAGGAATCAAGGGGTGGAGTGTCTGCTGTCTTCCATGTAAATGCAGTGCTCTCATATCTATCACCCTTAACACCATC
TGCTGAAGCAATGGATTCTAGTTCAGCCATTTCTTCTGGAGTTAGTTTCACTGACAAAGCCCCAATGTTTTGTTTGAGGTTTTCAATCTTGGTAGTTCCC
GGTATGGGACACACATCATCGCCCTGGTGATGGACCCAGGCCAGTGCTAGCTGTGATGGAGTGCATCCCTTCCTTGTCGCAATTTCACTAACCCTCTCAT
AAAGGATTTTATTATGCCCAAGATTCTCTGGCTGGAACCTTGGTAGGTTCTGCAATTTGAAACACACATTTCAGTAACAAAATTGAAAACCCAACATAAA
AGAGGTCATAATTGC