Detailed information on CNT30570728


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3096327Vitis viniferaSolanum tuberosum35.7825.1681.5200forward
CNT30585997Vitis viniferaMusa acuminata15.0333.286.984forward
CNT30510798Vitis viniferaSolanum lycopersicum16.6435.9186.0293forward
CNT30720265Vitis viniferaTriticum spelta16.133.0987.7890forward
CNT30365764Vitis viniferaSorghum bicolor16.6439.5788.1793forward
CNT30329937Vitis viniferaDioscorea rotundata38.4620.7583.26215forward

Expression of CNT30570728

Peptides detected in this lncRNA

>peptide 1 (86 aa)
MRSGPPPGPQSRARSVHHQYSCRVSPFQAKTAALVSIRTAVWMVMWSEPVILAPLNGCWGPNSVLQDMRPGISTSASSISRRPKSA*

>peptide 2 (38 aa)
MSLTLYSRPELVFSTSKDMAAADTDQISNKLTLWISRK*

>peptide 3 (29 aa)
ISLRICLQSVPNNGQNDLKLSIVGGGGVR*

Sequence

>CNT30570728
GATATCTCTTCGGATCTGTCTTCAATCCGTCCCTAATAATGGTCAAAACGATCTGAAACTCAGCATTGTCGGTGGAGGAGGGGTCCGGTAACTTGCCGCT
CTTGGCGTACTCCTCCTCAGCCTTGACCCCCTCGTGGATCAACAAGGTAGCGTCGCCGCCGTCGTCCACGATGAGATCGGGGCCGCCACCGGGACCCCAG
TCGAGGGCCCGCTCCGTGCACCACCAGTACTCCTGTAGGGTCTCGCCCTTCCAGGCGAAGACGGCGGCGCTGGTCTCGATAAGGACGGCAGTCTGGATGG
TCATGTGGAGTGAGCCAGTGATCTTGGCACCCTTGAATGGCTGCTGGGGTCCGAACTCAGTCCTGCAAGACATGAGGCCTGGCATCTCAACCTCCGCAAG
CTCGATCTCCAGACGGCCGAAGTCCGCCTGAGACATGTCCTTGACCTTGTACTCCCGGCCAGAACTGGTCTTCTCAACAAGCAAAGACATGGCTGCTGCT
GATACCGATCAAATTTCTAACAAACTCACTCTCTGGATCTCACGCAAATAAGAGAGAGA