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Detailed information on CNT30570681


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695521Vitis viniferaOryza sativa11.3420.2385.81155forward
CNT30678303Vitis viniferaSetaria viridis9.5836.885.5131forward
CNT30522020Vitis viniferaSetaria italica9.5827.6485.5131forward
CNT30639255Vitis viniferaNymphaea colorata9.837.0286.57134forward
CNT30515464Vitis viniferaJuglans regia20.3425.0586.33278forward
CNT30380094Vitis viniferaManihot esculenta20.3425.7485.25278forward
CNT30630888Vitis viniferaVigna unguiculata20.1240.6284275forward
CNT30505774Vitis viniferaNicotiana attenuata7.7522.1882.08106forward
CNT30710333Vitis viniferaGlycine max19.8231.1584.5271forward
CNT3094391Vitis viniferaSolanum tuberosum10.934.185.91149forward
CNT30299761Vitis viniferaTriticum aestivum6.9524.4285.2695forward
CNT30145708Vitis viniferaMedicago truncatula13.6124.1683.87186forward
CNT30439932Vitis viniferaAegilops tauschii6.9522.9585.2695forward
CNT30249161Vitis viniferaAvena sativa6.9520.2686.3295forward
CNT3061459Vitis viniferaArabidopsis lyrata12.3628.8480.47169forward
CNT30228866Vitis viniferaAnanas comosus16.0925.1782.27220forward
CNT30651207Vitis viniferaRosa chinensis17.1934.7188.94235forward
CNT30619829Vitis viniferaCajanus cajan18.2925.3588.4250forward
CNT30596794Vitis viniferaOryza meridionalis11.3423.3885.16155forward
CNT30356274Vitis viniferaLactuca sativa10.5322.0984.03144forward
CNT30370881Vitis viniferaOryza glumipatula11.3420.185.81155forward
CNT30410573Vitis viniferaPapaver somniferum18.7328.4880.47256forward
CNT30148202Vitis viniferaBrachypodium distachyon17.0442.7579.83233forward
CNT30579660Vitis viniferaEchinochloa crusgalli9.5821.6986.26131forward
CNT30174623Vitis viniferaVigna angularis20.1232.2885.09275forward
CNT30113105Vitis viniferaFicus carica17.563086.67240forward
CNT30724196Vitis viniferaLupinus angustifolius17.3428.4983.54237forward
CNT3049718Vitis viniferaCucumis sativus11.7830.8481.37161forward

Expression of CNT30570681

Peptides detected in this lncRNA

>peptide 1 (31 aa)
IVDLSYSWHKLNKPIMKFKLTYYMSQINLKS*

>peptide 2 (54 aa)
MDHSDQIRQSIFHVYGVAFKKGVIQIEETAQNTHIINLTHNTISLLTNHTLASQ*

>peptide 3 (57 aa)
MALIVVLGATEDLGSFGVVKESEDDDFHGTVTRSPESVGVKREAWVAMAMREGGWWC*

>peptide 4 (64 aa)
MVIHTTFSMIQFLDHKEIYNYHCLCSIGFGSWDCSTKCTFKCSQNQTKNPILIKLQKSANIMRR*

Sequence

>CNT30570681
ATAGTAGACCTAAGTTACTCATGGCATAAGTTAAACAAACCAATAATGAAGTTCAAACTCACCTACTATATGAGCCAAATTAATCTAAAAAGTTAAATTA
AGTACTAGTAAGTGAAGATCGAACTAAAGTAATGAGAACAAAATAATTAGTAAATAATGAGATTCAAACTCAAATAAATAAGTAGTAAGGTTTAAACTCG
TGATCATTCAATGGAAGCTACACAAACAAATCACAAGATTCATGCCCTCTCATAACACAAGGCTCACAAGTTTAGACTATTAAAAGCAAAAATATATAGA
GGTAATTTCAATAGAGCCTAGCACTAGGGAATTAAGGTTGGTCATAAATTTATTTATGAGCATACGTCACACCAAATGGTGATACACACAACATTCAGCA
TGATTCAATTCCTCGATCACAAAGAAATTTACAATTACCATTGCCTATGTAGCATTGGTTTTGGGAGTTGGGACTGCAGTACAAAGTGCACCTTCAAATG
TTCCCAAAATCAAACAAAGAACCCAATCTTAATTAAATTGCAGAAGTCAGCAAATATTATGAGAAGGTAAAAGAAGAGTAATGGAAGCCCAAGCCAATCT
AATTGGGGTTTATGGCCTGGTTGTGAAGAAACCTAAGGAGGACATGATCCTCTTGTGAGGGGTTTCCTCAGCTGCTTCTAATGGAGAATTTGTATGGACC
ATTCAGATCAGATAAGACAATCAATATTTCATGTTTATGGAGTAGCATTTAAGAAAGGAGTAATACAAATAGAAGAAACAGCACAAAATACTCACATAAT
TAATCTCACACACAACACCATCTCTCTCCTCACAAATCATACGCTTGCTTCCCAGTGAATTTGACCTCAATGGGGTTCACGTTCTTCCCAATGGACCTGA
AATTCACCCCAACCCCTTGGCGACCTGGGTTCACCTTCTCGGGATAGACCCCATCCTTGGGGTGCAAGTACTGCACCTCGCCATTGGGGAACACCCTGTA
AAACTGGTACTTGATCTTGTACTTGGACCTCAGCCTTGTTCCAAGCGCCAAGCACTGCTCCTTCCTGGCCAACTTGAGCAGATTGGGACCTTGCCTCATT
ATGGCGGGGTGAAGCCAACAGGGGCTTCTTTTGTCGGTGCTTCCTCCGCCATGGCCCTTATAGTGGTCCTGGGCGCAACGGAGGATTTGGGTAGTTTTGG
GGTGGTGAAGGAGAGTGAAGACGATGATTTCCATGGGACGGTAACACGGTCGCCGGAGAGTGTGGGGGTGAAGAGGGAAGCTTGGGTAGCCATGGCCATG
AGAGAAGGTGGGTGGTGGTGCTAAGGGTTGTAGTGTGAGTTGAGGATCAGGATCATGAGAGAAGGCT