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Detailed information on CNT30570592


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522345Vitis viniferaSetaria italica58.225.0784.04188forward
CNT30530404Vitis viniferaEucalyptus grandis72.1465.6385.84233forward
CNT30316147Vitis viniferaCorylus avellana66.5628.8687.44215forward
CNT30700549Vitis viniferaQuercus lobata75.2361.5286.83243forward
CNT30499549Vitis viniferaCoffea canephora68.4245.184.16221forward
CNT30615836Vitis viniferaSesamum indicum52.6344.3982.35170forward
CNT30277485Vitis viniferaChenopodium quinoa70.5926.7379.39228forward
CNT3020608Vitis viniferaCitrullus lanatus67.4949.4383.49218forward
CNT30729539Vitis viniferaCorchorus capsularis67.4932.4482.11218forward
CNT3068683Vitis viniferaQuercus suber69.6645.7387.11225forward
CNT30524728Vitis viniferaPhaseolus vulgaris72.1443.1582.4233forward
CNT30486152Vitis viniferaOlea europaea58.220.7789.89188forward
CNT30506399Vitis viniferaNicotiana attenuata61.9260.4284200forward
CNT3091042Vitis viniferaSolanum tuberosum28.4825.2183.792forward
CNT30177095Vitis viniferaSecale cereale59.1313.7885.86191forward
CNT30289293Vitis viniferaTriticum aestivum37.7740.1383.61122forward
CNT30223417Vitis viniferaHordeum vulgare59.1384.1486.39191forward
CNT30590847Vitis viniferaMusa acuminata33.4423.6381.48108forward
CNT3084565Vitis viniferaVigna radiata75.2314.3883.13243forward
CNT30539234Vitis viniferaBrassica napus69.6624.5982.67225forward
CNT30511842Vitis viniferaSolanum lycopersicum26.0118.3484.5284forward
CNT30145616Vitis viniferaMedicago truncatula62.8544.7183.74203forward
CNT30244810Vitis viniferaAvena sativa31.2712.586.14101forward
CNT30261302Vitis viniferaBrassica rapa65.6341.0182.55212forward
CNT30447453Vitis viniferaSaccharum spontaneum54.4930.7285.23176forward
CNT30131528Vitis viniferaLolium perenne74.352.0685.83240forward
CNT30231964Vitis viniferaAnanas comosus48.9212.9584.81158forward
CNT3066796Vitis viniferaLeersia perrieri31.2725.9682.18101forward
CNT30653881Vitis viniferaRosa chinensis65.6319.8586.32212forward
CNT30718631Vitis viniferaMalus domestica golden64.7136.4185.17209forward
CNT30339698Vitis viniferaEragrostis tef74.319.4383.33240forward
CNT30477892Vitis viniferaArabidopsis halleri70.2821.2181.5227forward
CNT30595456Vitis viniferaOryza meridionalis31.2717.7284.16101forward
CNT30360575Vitis viniferaLactuca sativa70.5937.8185.96228forward
CNT30411763Vitis viniferaPapaver somniferum70.5920.2378.51228forward
CNT30645151Vitis viniferaCannabis sativa67.822.9884.47219forward
CNT3055709Vitis viniferaAmborella trichopoda64.7131.9682.3209forward
CNT30105598Vitis viniferaOryza longistaminata74.334.8381.25240forward
CNT30319856Vitis viniferaAsparagus officinalis37.1542.8685120forward
CNT30574680Vitis viniferaOryza barthii74.326.281.67240forward
CNT30579496Vitis viniferaEchinochloa crusgalli59.1348.8586.91191forward
CNT30499107Vitis viniferaDigitaria exilis59.1348.8584.29191forward
CNT30115589Vitis viniferaOryza nivara74.316.8281.67240forward
CNT30604168Vitis viniferaOryza punctata68.4280.0783.26221forward
CNT30174824Vitis viniferaVigna angularis69.9723.7980.09226forward
CNT30550386Vitis viniferaOryza brachyantha42.7250.1884.78138forward
CNT30337932Vitis viniferaCynara cardunculus68.1126.8386.36220forward
CNT30726386Vitis viniferaLupinus angustifolius67.824.3681.28219forward
CNT3050773Vitis viniferaCucumis sativus64.7137.1981.82209forward

Expression of CNT30570592

Peptides detected in this lncRNA

>peptide 1 (53 aa)
LDPSSSVISHGQCLRCALPLIVAAPNTNWVDVAPVCLHLGVLQRITVHLAGAR*

>peptide 2 (30 aa)
PRSQLLCDKPWSMSPLCASPHRSSSEHQLG*

>peptide 3 (33 aa)
MSPPGGVAEDHRTPRWCSLARTAHPPSLPAQAC*

Sequence

>CNT30570592
ACCTCGATCCCAGCTCCTCTGTGATAAGCCATGGTCAATGTCTCCGCTGTGCGCTTCCCCTCATCGTAGCAGCTCCGAACACCAATTGGGTTGACGTTGC
CCCAGTATGTCTCCACCTGGGGGTGTTGCAGAGGATCACCGTACACCTCGCTGGTGCTCGTTAGCAAGAACCGCGCACCCACCCTCTTTGCCAGCCCAAG
CATGTTGAGTGTCCCTACCACATTGGATATGATGGTCTTGACGGGGTTGAACTTGTAATAAACAGGAGATGCGGGGCAAGCGAGGTGGTAGATCTGATCG
ACCTCCAAGAGGATGGGCTCAAC