« Back to Vitis vinifera search


Detailed information on CNT30570586


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30639595Vitis viniferaNymphaea colorata53.9178.8182.26372forward
CNT30628366Vitis viniferaVigna unguiculata27.5413.383.68190forward
CNT30221496Vitis viniferaHordeum vulgare27.3994.0386.77189forward
CNT30144739Vitis viniferaMedicago truncatula24.4936.4282.84169forward
CNT30435910Vitis viniferaAegilops tauschii23.1920.0882.5160forward
CNT30659902Vitis viniferaTriticum dicoccoides27.5461.6985.26190forward
CNT30611972Vitis viniferaArabis alpina11.0131.9392.1176forward
CNT30354796Vitis viniferaLactuca sativa75.5199.0579.85521forward
CNT30645006Vitis viniferaCannabis sativa27.5423.0981.05190forward
CNT3026679Vitis viniferaPopulus trichocarpa22.7513.2483.44157forward
CNT3065844Vitis viniferaSelaginella moellendorffii12.925.587.6489forward

Expression of CNT30570586

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MSLTLYSRPELVFSTSKDMAAADTDQISNKLTLWISRK*

>peptide 2 (61 aa)
EKQSAVSLHLVKPLNTGGGLLRNTNQSPLHLVISLRICLQSVPNNGQNDLKLSIVGGGGVR*

>peptide 3 (95 aa)
MRSGPPPGPQSRARSVHHQYSCRVSPFQAKTAALSRAMAAAAWVSIRTAVWMVMWSEPVILAPLNGCWGPNSVLQDMRPGISTSASSISRRPKSA*

Sequence

>CNT30570586
GGAAAAGCAAAGTGCCGTTAGCTTGCATCTGGTAAAGCCTCTTAACACCGGTGGTGGTCTCCTCAGAAACACCAACCAATCTCCCCTTCATCTTGTGATA
TCTCTTCGGATCTGTCTTCAATCCGTCCCTAATAATGGTCAAAACGATCTGAAACTCAGCATTGTCGGTGGAGGAGGGGTCCGGTAACTTGCCGCTCTTG
GCGTACTCCTCCTCAGCCTTGACCCCCTCGTGGATCAACAAGGTAGCGTCGCCGCCGTCGTCCACGATGAGATCGGGGCCGCCACCGGGACCCCAGTCGA
GGGCCCGCTCCGTGCACCACCAGTACTCCTGTAGGGTCTCGCCCTTCCAGGCGAAGACGGCGGCGCTGTCGCGGGCAATGGCAGCGGCGGCGTGGGTCTC
GATAAGGACGGCAGTCTGGATGGTCATGTGGAGTGAGCCAGTGATCTTGGCACCCTTGAATGGCTGCTGGGGTCCGAACTCAGTCCTGCAAGACATGAGG
CCTGGCATCTCAACCTCCGCAAGCTCGATCTCCAGACGGCCGAAGTCCGCCTGAGACATGTCCTTGACCTTGTACTCCCGGCCAGAACTGGTCTTCTCAA
CAAGCAAAGACATGGCTGCTGCTGATACCGATCAAATTTCTAACAAACTCACTCTCTGGATCTCACGCAAATAAGAGAGAGAAGTGGGCT