Detailed information on CNT30570460


BLAST search results

BLAST vs Swiss-Prot:
sp|Q08298|RD22_ARATH, E-value = 3e-50

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30381137Vitis viniferaManihot esculenta10.0921.4987.6581forward

Expression of CNT30570460

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MIRLFWNPDHGIVVNEMADRDCSWLNIEHFEGHMFWVPS*

>peptide 2 (43 aa)
MAGSSHSSSSFFIISASAEFSFRENRFKISGSLLDEKGMDSAT*

>peptide 3 (43 aa)
MTSCHGFSFASISTHQRNHVSPCLSECMAVENSIWVVHLMAHY*

>peptide 4 (63 aa)
MMLHSTWLLLPWQAPHIPLAPSLLSRLLRSFLSGKTGSRFRVACWMKRVWIQQLDEARKQLHL*

>peptide 5 (35 aa)
MNSIPHYILLKLTCIYSNHTIDTRNDYYMEQCNWA*

>peptide 6 (37 aa)
MYGSRKQHMGSSSYGTLLICLQPSSSPLQTHTPGSPF*

Sequence

>CNT30570460
TCCACACAACAATATTTACAATATTCCTTAAATCAACCGGGAAAGATTGATGAATAGCATTCCACACTACATTCTTCTCAAATTAACCTGCATTTATTCA
AACCACACCATTGATACTAGAAACGACTATTACATGGAACAATGCAACTGGGCTTGAGGATTAAATATTTCCGTTGATTTCATGATCAGGCTATTTTGGA
ATCCAGACCATGGCATTGTTGTGAACGAAATGGCAGATAGGGACTGTTCCTGGCTTAACATTGAGCACTTTGAAGGCCACATGTTTTGGGTGCCAAGCTG
ATGTATCACTATGACAAGCTGCCATGGCTTTAGCTTTGCTTCCATCAGCACCCACCAACGGAATCATGTAAGTCCGTGTCTTAGTGAATGTATGGCAGTA
GAAAACAGCATATGGGTAGTTCATCTTATGGCACACTACTGATTTGTCTGCAACCCTCTTCATCCCCACTCCAAACTCATACTCCTGGCTCCCCGTTTTG
ACCTCATTCGTCAGCACATTCACATTCCTTCCAAGCTTTGAAGTGCTGAAATGGATTAGGGACTGTAATGATGTTGCACAGTACCTGGCTTCTCCTTCCA
TGGCAGGCTCCTCACATTCCTCTAGCTCCTTCTTTATTATCTCGGCTTCTGCGGAGTTTTCTTTCAGGGAAAACCGGTTCAAGATTTCGGGTAGCTTGTT
GGATGAAAAGGGTATGGATTCAGCAACTTGATGAGGCAAGAAAACAGCTCCATTTGTAGTTGTGGCCAAGTTCATCTTCATTTTTTACCTGGATGCAGGT
CTG