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Detailed information on CNT30570453


BLAST search results

BLAST vs Swiss-Prot:
sp|P17598|CATA1_GOSHI, E-value = 5e-89

BLAST vs NONCODE:
NONBNAT003701, E-value = 4e-25

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30532478Vitis viniferaEucalyptus grandis50.1152.8881.36220forward
CNT30516697Vitis viniferaJuglans regia42.654.282.35187forward
CNT30373064Vitis viniferaArabidopsis thaliana33.9426.0985.23149forward
CNT30282683Vitis viniferaChenopodium quinoa28.0213.3685.37123forward
CNT30708944Vitis viniferaGlycine max25.5119.6885.71112forward
CNT3098188Vitis viniferaSolanum tuberosum51.2545.3680225forward
CNT3085325Vitis viniferaVigna radiata22.3213.8684.6998forward
CNT30542456Vitis viniferaBrassica napus66.5167.5979.11292forward
CNT30238041Vitis viniferaBrassica oleracea46.726.9780205forward
CNT30313764Vitis viniferaCamelina sativa33.2621.2882.88146forward
CNT30263082Vitis viniferaBrassica rapa27.5636.1285.95121forward
CNT30475173Vitis viniferaSaccharum spontaneum23.691483.65104forward
CNT30154268Vitis viniferaPrunus persica36.2233.487.42159forward
CNT30704833Vitis viniferaPrunus avium28.9317.7988.19127forward
CNT3022395Vitis viniferaPopulus trichocarpa56.7260.5880.32249forward

Expression of CNT30570453

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MTVVSSSYSYGFILQQTLDSTRGFPVELHIICLPSL

>peptide 2 (81 aa)
LLIPVHEIHGTVMVIVVKSTLGCIYWKLQIVRSKAVPLSIRIGKDSTLEHFIICVIYTRYNKSWVEGKHLILSKEIIYILV*

Sequence

>CNT30570453
CCTCCTCATCCCTGTGCATGAAATTCATGGAACCGTCATGGTGATTGTTGTGAAAAGCACACTTGGGTGCATTTACTGGAAGCTGCAGATAGTTCGGTCC
AAGGCGGTGCCTCTGAGTATCAGAATAGGCAAAGATTCTACCTTGGAGCATTTTATCATTTGTGTAATATATACCAGGTACAACAAGAGCTGGGTTGAAG
GCAAGCATCTCATTCTCAGCAAAGAAATTATCTATATTCTTGTTTAATACCAACCGGCCCACTGGCTGCAAGGGCAAGATATCCTCAGGATAGTTTCCAG
CCTTGATCGAGTCATAGAGATCCTGAGTAGCATGACTGTGGTTAGTTCCTCCTACTCTTATGGCTTCATCCTCCAACAAACACTTGACTCCACACGTGGG
TTTCCAGTGGAACTTCACATAATTTGCCTTCCCAGCCTT