Detailed information on CNT30570425


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONVVIT002217, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672673Vitis viniferaSetaria viridis4.7227.3387.882forward
CNT30533721Vitis viniferaEucalyptus grandis13.4133.3881.55233forward
CNT30516978Vitis viniferaJuglans regia15.4839.4483.27269forward
CNT30376279Vitis viniferaArabidopsis thaliana10.8231.5484.04188forward
CNT30629841Vitis viniferaVigna unguiculata9.6728.7282.14168forward
CNT30507460Vitis viniferaNicotiana attenuata9.5554.7981.33166forward
CNT30712288Vitis viniferaGlycine max7.6523.0584.21133forward
CNT3042792Vitis viniferaPrunus dulcis7.8336.8686.76136forward
CNT30635301Vitis viniferaCapsicum annuum5.8125.4485.15101forward
CNT3094368Vitis viniferaSolanum tuberosum8.0654.0583.57140forward
CNT30294278Vitis viniferaTriticum aestivum5.4722.0483.1695forward
CNT30564216Vitis viniferaActinidia chinensis9.0970.8581.65158forward
CNT3075006Vitis viniferaBrassica juncea5.6421.7884.6998forward
CNT30261201Vitis viniferaBrassica rapa10.6420.8381.62185forward
CNT30614377Vitis viniferaArabis alpina8.456.3782.19146forward
CNT30454500Vitis viniferaSaccharum spontaneum4.622.187.580forward
CNT3014814Vitis viniferaZea mays6.3922.1183.78111forward
CNT30217087Vitis viniferaKalanchoe fedtschenkoi12.7721.3781.98222forward
CNT30360483Vitis viniferaLactuca sativa5.5822.1583.5197forward
CNT30154501Vitis viniferaPrunus persica9.1550.9684.28159forward
CNT30644515Vitis viniferaCannabis sativa12.4337.3785.19216forward
CNT3027985Vitis viniferaTheobroma cacao14.1545.382.11246forward
CNT3037642Vitis viniferaCucumis melo6.2140.7586.11108forward
CNT30104607Vitis viniferaOryza rufipogon6.1629.8184.11107forward
CNT30578384Vitis viniferaOryza barthii4.620.4187.580forward
CNT30582394Vitis viniferaEchinochloa crusgalli6.3929.7685.59111forward
CNT30557050Vitis viniferaPanicum hallii4.621.0586.2580forward
CNT30112090Vitis viniferaFicus carica26.8722.8180.94467forward
CNT30725036Vitis viniferaLupinus angustifolius7.7120.8185.07134forward

Expression of CNT30570425

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MGTLLSIGPYSETMHKNFRKISSNMGTLLFIRPL*

>peptide 2 (34 aa)
MQVCNISSRLDLILKVFFLIKYKYLYKIWAPFCL*

>peptide 3 (35 aa)
MKGKREQHVLHYLNRHACNLNTMVVIKVVNKYTIL*

>peptide 4 (36 aa)
MCTIFSIGIGPLSTKICTKSPKIWAPICIEHFTKNV*

>peptide 5 (48 aa)
MGTHLSIPPSYYIYMGTLLSIGPLRLDIRAPHLRNFSIHQNLRKEKLK*

>peptide 6 (53 aa)
MLSITTSPPAARDPAGPAMGEPMGQAHLDAPKNWAYRSPVGWKVGQVPGYQWA*

>peptide 7 (55 aa)
MEKEEGALLEENGLRGEAERPLGEATGRALEVVGEVKLLLSWLAIGEAVAILLLW*

Sequence

>CNT30570425
CTGACAATGCCTTCAAACATATGCATGCTATAGATACCGAAAACTTTTGAAGGAATAAATAGGAGGATGACGATACAATGCATTGCTTTATCTATGCCAG
TGGCATGAAGCAAAATCATACTATCACCATGAAATATAAAAGATCATCTCTTCTGCTCGAATAGATAGAGACGATGACATAGGCATTGCTTTGTCTAAGT
TGGTGACTATTAGAGTAGTCATTTTGCTTTGAAATGAAAGGAAAAAGGGAACAACACGTACTTCATTATCTAAATAGGCATGCATGCAATTTAAACACGA
TGGTTGTGATAAAAGTTGTCAACAAATATACAATTCTTTGATCATCTCAATAGGCGAAAACCCTACTTGACGAAGTAAGGAAGGTTTAGGACATAGAGGA
GGAAGTAAGCCCAAGTGACGCCGGAAATTCCTCCGAAGAAGAACCCTCCGGTGAACTTGGCCCAACCGTCGGCCGATTGGAGCTGGTCCGGCTCCTTGGT
CCGCCCGGTGAGGGTTAAACTCGGAGCGATCGACGGCTCTCCTTCCTTGAAGGATGCAATTCCATACATTGTCAAGCAGATGCTCAGTATAACAACAAGT
CCACCAGCAGCTAGAGACCCTGCTGGCCCAGCAATGGGGGAACCCATGGGCCAGGCCCACCTCGATGCCCCGAAGAACTGGGCTTACCGCAGTCCGGTAG
GCTGGAAGGTTGGACAGGTACCAGGCTATCAATGGGCTTGAAGTTATAGGTGTTTCAAGGCTTCCAATAAATGGATCACCATTAATGGGCTGGATCACTT
GGTATGTTGGCTGCACAATGCACAATAATAATAATAATAATAATAATATTTACATTTTTCTAAAATAATTATAATAAAAGGAAAAATAAATGGAAAAATA
AATAAATACGTATGCAAGTATGTAATATTTCTAGTAGGTTAGATTTAATTTTAAAAGTATTTTTTTTAATAAAATATAAATATCTTTATAAAATATGGGC
ACCCTTTTGTCTATAGGACCCTATAGTGAGACAATGCACAAAAATTTCCGTAAAATCTCTTCAAATATGGGTACCCTTTTGTTTATAAGACCCTTATAGT
GAAATTTGGCACAAAAATATCTACAAAATATATTCAAATATGTGCACCATTTTCTCTATAGGAATAGGACCCTTAAGCACAAAAATTTGTACAAAATCTC
CAAAAATATGGGCACCCATATGCATAGAACATTTCACAAAAAATGTATAAATTATCTAGAGATATGGGCACCCTTTGGTTCATAGGACCCTAATAGTGGA
ATTTTGCGCAAAAATTTGTACAATATCTCTTGAAATATGGGCACCCATTTGTCTATACCACCCTCATACTATATCTATATGGGCACCCTTTTGTCTATAG
GACCCTTACGGCTAGACATAAGGGCACCCCATTTGAGAAATTTCAGCATTCATCAAAATTTGAGAAAAGAAAAATTGAAGTAGTTTTTGTGAGTTACCTT
CTCAGACTGGATAGCCTTGATGGAGAAAGAGGAGGGTGCCCTCCTAGAGGAAAATGGCCTAAGAGGAGAAGCAGAGAGGCCTTTGGGAGAGGCAACAGGC
AGGGCCCTAGAGGTTGTTGGTGAGGTGAAGCTGCTCTTGAGCTGGCTGGCCATCGGAGAAGCTGTTGCCATCCTGCTTCTTTGGTAATCTCAGGGCTCTC
AGTTTAGAGAGGCTTTGGTAGAAAGAAATGAAGAGGAG