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Detailed information on CNT30570403


BLAST search results

BLAST vs Swiss-Prot:
sp|Q08298|RD22_ARATH, E-value = 4e-71

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30516848Vitis viniferaJuglans regia13.0722.1784100forward
CNT30727307Vitis viniferaCorchorus capsularis42.3523.4179.01324forward
CNT30381078Vitis viniferaManihot esculenta48.6332.5580.38372forward
CNT3084947Vitis viniferaVigna radiata41.4432.3878.55317forward
CNT3033699Vitis viniferaTheobroma cacao27.9715.3479.44214forward

Expression of CNT30570403

Peptides detected in this lncRNA

>peptide 1 (78 aa)
LGVPCRCVCMAHSYCFNFGPISTHQGNHISPCGLSLVAVKHCIGIALLVTHHSFVTCQLLHPSCNCVLLLRGFLLHLC*

>peptide 2 (88 aa)
MDSSEVAQYFSSPLIPGSSHSLIVFLIVSASSDSGFIENSFRISGNFLDEKGKKVARFASLMKCNSIFVPGCMFFSKKKRATFGSSWS*

>peptide 3 (48 aa)
MLSLVACVNRYSSFADANSGATSRFSFSCVNIYPSAFAHPDSGAASGFA

Sequence

>CNT30570403
CTTGGGGTTCCATGCCGATGTGTCTGTATGGCACACAGCTACTGCTTTAACTTTGGACCCATCAGCACCCACCAAGGGAACCATATAAGCCCTTGTGGTC
TGAGTCTTGTGGCAGTAAAACACTGCATAGGGATAGCTCTGCTTGTGACACACCACAGCTTTGTCACCTGCCAGCTTCTTCACCCCAGTTGTAATTGTGT
ACTGCTGCTCCGGGGTTTCCTTCTCCACCTCTGTTGAAATCACCTGAACACCTTTTCCAAGCTTTGAGGTGCTGAAATCAACCATGGATTCTAGTGAAGT
TGCACAATACTTTTCCTCTCCTTTAATCCCAGGCTCCTCACACTCTCTGATTGTGTTCTTGATTGTCTCAGCTTCTTCTGATTCTGGTTTTATCGAGAAC
TCGTTCAGAATTTCTGGGAATTTTTTGGATGAAAAAGGCAAGAAGGTGGCTAGATTTGCATCCCTAATGAAGTGCAACTCCATCTTTGTCCCAGGTTGCA
TGTTCTTCTCAAAGAAGAAAAGAGCTACATTTGGATCATCATGGAGCTGATCCTCAGTAGCAGCATACTTGTAATCGAAGGGTGATTTACTTTTCCCTTT
ACCAACACCAACATATACATGCTTTCCCTTGTGGCCTGCGTTAACAGATACTCCTCCTTTGCCGACGCCAACAGTGGTGCCACCTCCAGGTTTTCCTTTT
CCTGCGTGAACATTTACCCCAGTGCCTTTGCCCACCCCGACAGTGGTGCCGCCTCCGGATTTGCC